PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7LYV

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	66.7	H1	15	H1-15-*	-1	SVSGDAIsgSNYYWG	BBBLBBABLBABBBB
A	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	66.7	H2	9	H2-9-1	6	SIYHTGSTF	BBBAALBBB
A	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	100.0	H3	12	H3-12-*	-1	ARRIRGYSGTYD	BBBBBEAABBBB
A	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	100.0	H4	8	H4-8-1	11	VDTSKNQF	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	81.8	L1	11	L1-11-*	-1	RASQDISSYVA	BBABBBBBBBB
B	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	62.5	L2	8	L2-8-*	-1	SSAStlPS
B	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	0.0	L3	5	L3-5-1	10	QQLNN	BBEAB
B	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	66.7	L4	6	L4-6-2	10	RSGTDF	BBEABB
C	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	66.7	H1	15	H1-15-*	-1	SVSGDAIsgSNYYWG	BBBLBBAAABABBBB
C	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	66.7	H2	9	H2-9-1	8	SIYHTGSTF	BBBAALBBB
C	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	100.0	H3	12	H3-12-*	-1	ARRIRGYSGTYD	BBBBBEAABBBB
C	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	100.0	H4	8	H4-8-1	12	VDTSKNQF	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	81.8	L1	11	L1-11-*	-1	RASQDISSYVA	BBABBABABBB
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	62.5	L2	8	L2-8-*	-1	SSAStlps
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	0.0	L3	5	L3-5-1	9	QQLNN	BBEAB
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	66.7	L4	6	L4-6-2	22	RSGTDF	BBEABB
E	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	66.7	H1	15	H1-15-*	-1	SVSGDAIsgSNYYWG	BBBLBBABLBABBBB
E	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	66.7	H2	9	H2-9-1	7	SIYHTGSTF	BBBAALBBB
E	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	100.0	H3	12	H3-12-*	-1	ARRIRGYSGTYD	BBBBBEAABBBB
E	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	100.0	H4	8	H4-8-1	12	VDTSKNQF	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	81.8	L1	11	L1-11-*	-1	RASQDISSYVA	BBABBABABBB
F	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	62.5	L2	8	L2-8-*	-1	SSAStlps
F	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	0.0	L3	5	L3-5-1	10	QQLNN	BBEAB
F	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	66.7	L4	6	L4-6-2	18	RSGTDF	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	66.7	H1	15	H1-15-*	-1	SVSGDAIsgSNYYWG	BBBLBBABLBABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	66.7	H2	9	H2-9-1	7	SIYHTGSTF	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	100.0	H3	12	H3-12-*	-1	ARRIRGYSGTYD	BBBBBEAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-39*01	91.8	Hu_IGHV4-39*01	100.0	H4	8	H4-8-1	11	VDTSKNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	81.8	L1	11	L1-11-*	-1	RASQDISSYVA	BBABBABABBB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	62.5	L2	8	L2-8-*	-1	SSAStlps
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	0.0	L3	5	L3-5-1	12	QQLNN	BBEAB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	66.7	L4	6	L4-6-2	17	RSGTDF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022