PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7LY9

#CDRs = 8; #Clusters = 14.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	46.2	H1	13	H1-13-*	-1	EASGYNIRDYFIH	BBAABBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	60.0	H2	10	H2-10-*	-1	WINPKTGQPN	BBBAABBBBB
A	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	100.0	H3	12	H3-12-*	-1	ARQRSDYWDFDV	BBBABABBBBAB
A	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	0.0	H4	12	H4-12-*	-1	RHASwdfdTYSF
B	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	46.2	H1	13	H1-13-*	-1	EASGYNIRDYFIH	BBAABBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	60.0	H2	10	H2-10-*	-1	WINPKTGQPN	BBBAABBBBB
B	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	100.0	H3	12	H3-12-*	-1	ARQRSDYWDFDV	BBBBLLBBBBAB
B	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	0.0	H4	12	H4-12-*	-1	RHASwdfdTYSF
C	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	None	0.0	L1	7	L1-7-*	-1	QANGYLN
C	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	None	37.5	L2	8	L2-8-1	15	YDGSKLER	BLEABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	Hu_IGKV1-17*02	0.0	L3	5	L3-5-1	40	QVYEF	BBAAB
C	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	Hu_IGKV1-17*02	33.3	L4	6	L4-6-2	18	RWGQEY	BBEABB
E	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	46.2	H1	13	H1-13-*	-1	EASGYNIRDYFIH	BBAABBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	60.0	H2	10	H2-10-*	-1	WINPKTGQPN	BBBAABBBBB
E	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	100.0	H3	12	H3-12-*	-1	ARQRSDYWDFDV	BBBABABBBBAB
E	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	0.0	H4	12	H4-12-*	-1	RHASwdfdTYSF
H	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	76.9	H1	13	H1-13-1	24	TASGFSFDDSTMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	80.0	H2	10	H2-10-*	-1	LISWNGGRTY	BBBAABELAB
H	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H3	23	H3-23-*	-1	AKDKGdsdydynlgYSYFYYMDG
H	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H4	8	H4-8-1	21	RDNSKNSL	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	None	0.0	L1	7	L1-7-*	-1	QANGYLN
I	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	None	37.5	L2	8	L2-8-1	18	YDGSKLER	BLLABBBB
I	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	Hu_IGKV1-17*02	0.0	L3	5	L3-5-1	45	QVYEF	BBAAB
I	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	Hu_IGKV1-17*02	33.3	L4	6	L4-6-2	12	RWGQEY	BBEABB
L	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	72.7	L1	11	L1-11-3	15	GGNNIANKNVH	BBBLAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	87.5	L2	8	L2-8-*	-1	YYDDDRPS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	88.9	L3	11	L3-11-1	14	QVWDSNSDHVV	BBBBAAALBBB
L	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	100.0	L4	6	L4-6-2	20	NSGNTA	BBEABB
M	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	None	0.0	L1	7	L1-7-*	-1	QANGYLN
M	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	None	37.5	L2	8	L2-8-1	13	YDGSKLER	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	Hu_IGKV1-17*02	0.0	L3	5	L3-5-1	44	QVYEF	BBAAB
M	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	Hu_IGKV1-17*02	33.3	L4	6	L4-6-2	13	RWGQEY	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022