PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7LKA

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	100.0	H1	13	H1-13-1	10	AASGFTVSSNYMS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	88.9	H2	9	H2-9-1	7	VIYSGGSTF	BBBAALBBB
A	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	100.0	H3	11	H3-11-*	-1	ARDLGTGLFDY	BBBAELLBBAB
A	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	20	RASQGISSYLA	BBABBALABBB
B	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	8	YAASTLQS	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	85.7	L3	10	L3-10-*	-1	QQLDSypPGT	BBBBABAAEB
B	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	8	GSGTEF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	100.0	H1	13	H1-13-1	9	AASGFTVSSNYMS	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	88.9	H2	9	H2-9-1	7	VIYSGGSTF	BBBAALBBB
C	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	100.0	H3	11	H3-11-*	-1	ARDLGTGLFDY	BBBAELLBBAB
C	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	21	RASQGISSYLA	BBABBALABBB
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	11	YAASTLQS	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	85.7	L3	10	L3-10-*	-1	QQLDSypPGT	BBBALBAAEB
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	8	GSGTEF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	100.0	H1	13	H1-13-1	13	AASGFTVSSNYMS	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	88.9	H2	9	H2-9-1	7	VIYSGGSTF	BBBAALBBB
E	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	100.0	H3	11	H3-11-*	-1	ARDLGTGLFDY	BBBAELLBBAB
E	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	100.0	H4	8	H4-8-1	9	RDNSKNTL	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	22	RASQGISSYLA	BBABBALABBB
F	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	15	YAASTLQS	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	85.7	L3	10	L3-10-cis78-*	-1	QQLDSypPGT	BBBALBAAEB
F	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	11	GSGTEF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	100.0	H1	13	H1-13-1	13	AASGFTVSSNYMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	88.9	H2	9	H2-9-1	12	VIYSGGSTF	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	100.0	H3	11	H3-11-*	-1	ARDLGTGLFDY	BBBAELLBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-53*01	100.0	Hu_IGHV3-53*01	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	22	RASQGISSYLA	BBABBALABBB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	9	YAASTLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	85.7	L3	10	L3-10-*	-1	QQLDSypPGT	BBBBABAAEB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	100.0	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	10	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022