PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7LG6

#CDRs = 8; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Macaca.mulatta	Ma_IGHV4-2*01	86.3	CDRLenMismatch	-1.0	H1	14	H1-14-*	-1	AVSGDSIStNNGWS	BBBLBBAABLBLBB
C	heavy	Macaca.mulatta	Ma_IGHV4-2*01	86.3	Ma_IGHV4-2*01	50.0	H2	10	H2-10-1	8	YINGRSGSTR	BBBAAALBBB
C	heavy	Macaca.mulatta	Ma_IGHV4-2*01	86.3	Ma_IGHV4-2*01	50.0	H3	13	H3-13-*	-1	AFFWSTYYKRFDV	BBBBBBAABBBBB
C	heavy	Macaca.mulatta	Ma_IGHV4-2*01	86.3	Ma_IGHV4-2*01	87.5	H4	8	H4-8-1	12	TDTSGNQF	BBAAALBB
D	kappa	Macaca.mulatta	Ma_IGKV3S6*01	95.6	Ma_IGKV3S6*01	90.9	L1	11	L1-11-1	5	RASQSVDSRLA	BBABBAEABBB
D	kappa	Macaca.mulatta	Ma_IGKV3S6*01	95.6	Ma_IGKV3S6*01	87.5	L2	8	L2-8-1	4	YDVSSRAT	BLEABBBB
D	kappa	Macaca.mulatta	Ma_IGKV3S6*01	95.6	Ma_IGKV3S6*01	42.9	L3	9	L3-9-*	-1	HQENDWPWT	BBAABAALB
D	kappa	Macaca.mulatta	Ma_IGKV3S6*01	95.6	Ma_IGKV3S6*01	100.0	L4	6	L4-6-1	6	GSGTEF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV7-4-1*03	61.7	Hu_IGHV7-4-1*03	61.5	H1	13	H1-13-*	-1	KASGYIFTDYLIH	BBBLBBABELBBB
H	heavy	Homo.sapiens	Hu_IGHV7-4-1*03	61.7	Hu_IGHV7-4-1*03	50.0	H2	10	H2-10-1	13	RINTNAGLMY	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV7-4-1*03	61.7	Hu_IGHV7-4-1*03	0.0	H3	15	H3-15-*	-1	GRVVDGfNAAGPLEF
H	heavy	Homo.sapiens	Hu_IGHV7-4-1*03	61.7	Hu_IGHV7-4-1*03	0.0	H4	13	H4-13-*	-1	RvvdwrTPSLGTV
J	heavy	Macaca.mulatta	Ma_IGHV4-2*01	86.3	CDRLenMismatch	-1.0	H1	14	H1-14-*	-1	AVSGDSIStNNGWS	BBBLBBAABLBLBB
J	heavy	Macaca.mulatta	Ma_IGHV4-2*01	86.3	Ma_IGHV4-2*01	50.0	H2	10	H2-10-1	8	YINGRSGSTR	BBBAAALBBB
J	heavy	Macaca.mulatta	Ma_IGHV4-2*01	86.3	Ma_IGHV4-2*01	50.0	H3	13	H3-13-*	-1	AFFWSTYYKRFDV	BBBBBBAABBBBB
J	heavy	Macaca.mulatta	Ma_IGHV4-2*01	86.3	Ma_IGHV4-2*01	87.5	H4	8	H4-8-1	12	TDTSGNQF	BBAAALBB
K	heavy	Macaca.mulatta	Ma_IGHV4-2*01	86.3	CDRLenMismatch	-1.0	H1	14	H1-14-*	-1	AVSGDSIStNNGWS	BBBLBBAABLBLBB
K	heavy	Macaca.mulatta	Ma_IGHV4-2*01	86.3	Ma_IGHV4-2*01	50.0	H2	10	H2-10-1	8	YINGRSGSTR	BBBAAALBBB
K	heavy	Macaca.mulatta	Ma_IGHV4-2*01	86.3	Ma_IGHV4-2*01	50.0	H3	13	H3-13-*	-1	AFFWSTYYKRFDV	BBBBBBAABBBBB
K	heavy	Macaca.mulatta	Ma_IGHV4-2*01	86.3	Ma_IGHV4-2*01	87.5	H4	8	H4-8-1	12	TDTSGNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-OR2-268*01	75.0	CDRLenMismatch	-1.0	L1	11	L1-11-1	5	RASQYVDRSIS	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3-OR2-268*01	75.0	Hu_IGKV3-OR2-268*01	50.0	L2	8	L2-8-*	-1	YAASSRSI	ABEABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-OR2-268*01	75.0	Hu_IGKV3-OR2-268*01	71.4	L3	9	L3-9-cis7-*	-1	QQDYYWPVT	BBBAAEbBB
L	kappa	Homo.sapiens	Hu_IGKV3-OR2-268*01	75.0	Hu_IGKV3-OR2-268*01	83.3	L4	6	L4-6-1	9	GSGRDF	EBEABB
M	kappa	Macaca.mulatta	Ma_IGKV3S6*01	95.6	Ma_IGKV3S6*01	90.9	L1	11	L1-11-1	5	RASQSVDSRLA	BBABBAEABBB
M	kappa	Macaca.mulatta	Ma_IGKV3S6*01	95.6	Ma_IGKV3S6*01	87.5	L2	8	L2-8-1	4	YDVSSRAT	BLEABBBB
M	kappa	Macaca.mulatta	Ma_IGKV3S6*01	95.6	Ma_IGKV3S6*01	42.9	L3	9	L3-9-*	-1	HQENDWPWT	BBAABAALB
M	kappa	Macaca.mulatta	Ma_IGKV3S6*01	95.6	Ma_IGKV3S6*01	100.0	L4	6	L4-6-1	6	GSGTEF	EBEABB
N	kappa	Macaca.mulatta	Ma_IGKV3S6*01	95.6	Ma_IGKV3S6*01	90.9	L1	11	L1-11-1	5	RASQSVDSRLA	BBABBAEABBB
N	kappa	Macaca.mulatta	Ma_IGKV3S6*01	95.6	Ma_IGKV3S6*01	87.5	L2	8	L2-8-1	4	YDVSSRAT	BLEABBBB
N	kappa	Macaca.mulatta	Ma_IGKV3S6*01	95.6	Ma_IGKV3S6*01	42.9	L3	9	L3-9-*	-1	HQENDWPWT	BBAABAALB
N	kappa	Macaca.mulatta	Ma_IGKV3S6*01	95.6	Ma_IGKV3S6*01	100.0	L4	6	L4-6-1	6	GSGTEF	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV7-4-1*03	61.7	Hu_IGHV7-4-1*03	61.5	H1	13	H1-13-*	-1	KASGYIFTDYLIH	BBBLBBABELBBB
O	heavy	Homo.sapiens	Hu_IGHV7-4-1*03	61.7	Hu_IGHV7-4-1*03	50.0	H2	10	H2-10-1	13	RINTNAGLMY	BBBAAALBBB
O	heavy	Homo.sapiens	Hu_IGHV7-4-1*03	61.7	Hu_IGHV7-4-1*03	0.0	H3	15	H3-15-*	-1	GRVVDGfNAAGPLEF
O	heavy	Homo.sapiens	Hu_IGHV7-4-1*03	61.7	Hu_IGHV7-4-1*03	0.0	H4	13	H4-13-*	-1	RvvdwrTPSLGTV
P	heavy	Homo.sapiens	Hu_IGHV7-4-1*03	61.7	Hu_IGHV7-4-1*03	61.5	H1	13	H1-13-*	-1	KASGYIFTDYLIH	BBBLBBABELBBB
P	heavy	Homo.sapiens	Hu_IGHV7-4-1*03	61.7	Hu_IGHV7-4-1*03	50.0	H2	10	H2-10-1	13	RINTNAGLMY	BBBAAALBBB
P	heavy	Homo.sapiens	Hu_IGHV7-4-1*03	61.7	Hu_IGHV7-4-1*03	0.0	H3	15	H3-15-*	-1	GRVVDGfNAAGPLEF
P	heavy	Homo.sapiens	Hu_IGHV7-4-1*03	61.7	Hu_IGHV7-4-1*03	0.0	H4	13	H4-13-*	-1	RvvdwrTPSLGTV
Q	kappa	Homo.sapiens	Hu_IGKV3-OR2-268*01	75.0	CDRLenMismatch	-1.0	L1	11	L1-11-1	5	RASQYVDRSIS	BBABBAEABBB
Q	kappa	Homo.sapiens	Hu_IGKV3-OR2-268*01	75.0	Hu_IGKV3-OR2-268*01	50.0	L2	8	L2-8-*	-1	YAASSRSI	ABEABBBB
Q	kappa	Homo.sapiens	Hu_IGKV3-OR2-268*01	75.0	Hu_IGKV3-OR2-268*01	71.4	L3	9	L3-9-cis7-*	-1	QQDYYWPVT	BBBAAEbBB
Q	kappa	Homo.sapiens	Hu_IGKV3-OR2-268*01	75.0	Hu_IGKV3-OR2-268*01	83.3	L4	6	L4-6-1	9	GSGRDF	EBEABB
R	kappa	Homo.sapiens	Hu_IGKV3-OR2-268*01	75.0	CDRLenMismatch	-1.0	L1	11	L1-11-1	5	RASQYVDRSIS	BBABBAEABBB
R	kappa	Homo.sapiens	Hu_IGKV3-OR2-268*01	75.0	Hu_IGKV3-OR2-268*01	50.0	L2	8	L2-8-*	-1	YAASSRSI	ABEABBBB
R	kappa	Homo.sapiens	Hu_IGKV3-OR2-268*01	75.0	Hu_IGKV3-OR2-268*01	71.4	L3	9	L3-9-cis7-*	-1	QQDYYWPVT	BBBAAEbBB
R	kappa	Homo.sapiens	Hu_IGKV3-OR2-268*01	75.0	Hu_IGKV3-OR2-268*01	83.3	L4	6	L4-6-1	9	GSGRDF	EBEABB

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