PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7LD1

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	91.8	Hu_IGHV1-46*01	53.8	H1	13	H1-13-*	-1	QASANTFTNHYIH	BBBEABAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	91.8	Hu_IGHV1-46*01	60.0	H2	10	H2-10-6	12	IIYPTGGNTI	BBBABLLBBB
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	91.8	Hu_IGHV1-46*01	100.0	H3	24	H3-24-*	-1	ARDVRVDDSWsgydllsggtYFDY
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	91.8	Hu_IGHV1-46*01	62.5	H4	8	H4-8-*	-1	RDTSLNTI	BAAAALBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	88.2	L1	17	L1-17-*	-1	RSSQSVlyssnnENYLA
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	100.0	L2	8	L2-8-*	-1	YWASTRES	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	85.7	L3	9	L3-9-*	-1	QQYYSLPRT	BBAABAABB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	100.0	L4	6	L4-6-2	30	GSGTDF	BBEABB
M	heavy	Homo.sapiens	Hu_IGHV1-46*01	91.8	Hu_IGHV1-46*01	53.8	H1	13	H1-13-*	-1	QASANTFTNHYIH	BBBEBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV1-46*01	91.8	Hu_IGHV1-46*01	60.0	H2	10	H2-10-6	12	IIYPTGGNTI	BBBABLLBBB
M	heavy	Homo.sapiens	Hu_IGHV1-46*01	91.8	Hu_IGHV1-46*01	100.0	H3	24	H3-24-*	-1	ARDVRVDDSWsgydllsggtYFDY
M	heavy	Homo.sapiens	Hu_IGHV1-46*01	91.8	Hu_IGHV1-46*01	62.5	H4	8	H4-8-*	-1	RDTSLNTI	AAAAALBB
N	kappa	Homo.sapiens	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	88.2	L1	17	L1-17-*	-1	RSSQSVlyssnnENYLA
N	kappa	Homo.sapiens	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	10	YWASTRES	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	85.7	L3	9	L3-9-*	-1	QQYYSLPRT	BBAABAABB
N	kappa	Homo.sapiens	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	100.0	L4	6	L4-6-2	25	GSGTDF	BBEABB
O	kappa	Homo.sapiens	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	88.2	L1	17	L1-17-*	-1	RSSQSVlyssnnENYLA	BBABLABBAAALALABB
O	kappa	Homo.sapiens	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	100.0	L2	8	L2-8-*	-1	YWASTRES	BLLABBBB
O	kappa	Homo.sapiens	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	85.7	L3	9	L3-9-*	-1	QQYYSLPRT	BBAABAABB
O	kappa	Homo.sapiens	Hu_IGKV4-1*01	97.1	Hu_IGKV4-1*01	100.0	L4	6	L4-6-2	29	GSGTDF	BBEABB
P	heavy	Homo.sapiens	Hu_IGHV1-46*01	91.8	Hu_IGHV1-46*01	53.8	H1	13	H1-13-*	-1	QASANTFTNHYIH	BBBEAAAAABBBB
P	heavy	Homo.sapiens	Hu_IGHV1-46*01	91.8	Hu_IGHV1-46*01	60.0	H2	10	H2-10-6	16	IIYPTGGNTI	BBBABLLBBB
P	heavy	Homo.sapiens	Hu_IGHV1-46*01	91.8	Hu_IGHV1-46*01	100.0	H3	24	H3-24-*	-1	ARDVRVDDSWsgydllsggtYFDY
P	heavy	Homo.sapiens	Hu_IGHV1-46*01	91.8	Hu_IGHV1-46*01	62.5	H4	8	H4-8-*	-1	RDTSLNTI	BAAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022