PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7L5J

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
L	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	100.0	L1	10	L1-10-1	22	SASSSVSYMH	BBABBBABBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	100.0	L2	8	L2-8-1	22	YSTSNLAS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	87.5	L3	9	L3-9-*	-1	QQRSSYPFT	BBAAABBBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	100.0	L4	6	L4-6-1	20	GSGTSY	EBEABB
W	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	100.0	H1	13	H1-13-1	20	AASGFDFSRYWMS	BBBLBBAAABBBB
W	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	80.0	H2	10	H2-10-2	16	QINPHSSTIN	BBBAALABBB
W	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	100.0	H3	12	H3-12-*	-1	ARLLRYFYALDY	BBBBAABALBAB
W	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	100.0	H4	8	H4-8-1	19	RDNAKNTL	BBAAALBB
X	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	100.0	L1	10	L1-10-1	22	SASSSVSYMH	BBABBBABBB
X	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	100.0	L2	8	L2-8-1	22	YSTSNLAS	BLLABBBB
X	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	87.5	L3	9	L3-9-*	-1	QQRSSYPFT	BBAAABBBB
X	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	100.0	L4	6	L4-6-1	20	GSGTSY	EBEABB
Y	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	100.0	H1	13	H1-13-1	20	AASGFDFSRYWMS	BBBLBBAAABBBB
Y	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	80.0	H2	10	H2-10-2	16	QINPHSSTIN	BBBAALABBB
Y	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	100.0	H3	12	H3-12-*	-1	ARLLRYFYALDY	BBBBAABALBAB
Y	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	100.0	H4	8	H4-8-1	19	RDNAKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022