PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7KQY

#CDRs = 4; #Clusters = 7.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	61.5	H1	13	H1-13-*	-1	KTSGYTFTNYGIN	BBBLBABABBBBB
A	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	40.0	H2	10	H2-10-1	15	YIYIGAGDTD	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	50.0	H3	9	H3-9-*	-1	AGTGTRFVY	BBLEABBAB
A	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	6	SDTSASTV	BBAAALBB
B	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	61.5	H1	13	H1-13-*	-1	KTSgyTFTNYGIN
B	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	40.0	H2	10	H2-10-1	17	YIYIGAGDTD	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	50.0	H3	9	H3-9-*	-1	AGTGTRFVY	BBAEBLBBB
B	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	75.0	H4	8	H4-8-*	-1	SDTSASTV	BBABEBBB
C	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	61.5	H1	13	H1-13-*	-1	KTSgyTFTNYGIN
C	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	40.0	H2	10	H2-10-1	8	YIYIGAGDTD	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	50.0	H3	9	H3-9-*	-1	AGTGTRFVY	BBAEAABBB
C	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	13	SDTSASTV	BBAAALBB
D	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	61.5	H1	13	H1-13-*	-1	KTSGYTFTNYGIN	BBBBBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	40.0	H2	10	H2-10-3	16	YIYIGAGDTD	BBBBEALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	50.0	H3	9	H3-9-*	-1	AGTgtrFVY
D	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	6	SDTSASTV	BBAAALBB
E	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	61.5	H1	13	H1-13-*	-1	KTSGYTFTNYGIN	BBBLBABABBBBB
E	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	40.0	H2	10	H2-10-*	-1	YIYIGAGDTD	BBBBAALBBB
E	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	50.0	H3	9	H3-9-*	-1	AGTGTRFVY	BBBBAABBB
E	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	14	SDTSASTV	BBAAALBB
F	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	61.5	H1	13	H1-13-*	-1	KTSGytftnYGIN
F	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	40.0	H2	10	H2-10-1	8	YIYIGAGDTD	BBBAAALBBB
F	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	50.0	H3	9	H3-9-*	-1	AGTGTRFVY	BBEBABABL
F	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	13	SDTSASTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022