PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7KGV

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV9-3-1*01	63.0	Mo_IGHV9-3-1*01	61.5	H1	13	H1-13-1	16	AAGGYSFTDYVMN	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV9-3-1*01	63.0	Mo_IGHV9-3-1*01	50.0	H2	10	H2-10-1	17	SINTSNGATT	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV9-3-1*01	63.0	Mo_IGHV9-3-1*01	100.0	H3	12	H3-12-*	-1	ARNFRGNGAMDY	BBBBBLABBBAB
C	heavy	Mus.musculus	Mo_IGHV9-3-1*01	63.0	Mo_IGHV9-3-1*01	62.5	H4	8	H4-8-1	11	VDSSASTA	BBAAALBB
D	heavy	Mus.musculus	Mo_IGHV9-3-1*01	63.0	Mo_IGHV9-3-1*01	61.5	H1	13	H1-13-1	16	AAGGYSFTDYVMN	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV9-3-1*01	63.0	Mo_IGHV9-3-1*01	50.0	H2	10	H2-10-1	17	SINTSNGATT	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV9-3-1*01	63.0	Mo_IGHV9-3-1*01	100.0	H3	12	H3-12-*	-1	ARNFRGNGAMDY	BBBBBLABBBAB
D	heavy	Mus.musculus	Mo_IGHV9-3-1*01	63.0	Mo_IGHV9-3-1*01	62.5	H4	8	H4-8-1	10	VDSSASTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV3-1*01	65.7	CDRLenMismatch	-1.0	L1	14	L1-14-*	-1	QASNNITTYssfIF	BBABBABAABBABB
E	kappa	Mus.musculus	Mo_IGKV3-1*01	65.7	Mo_IGKV3-1*01	50.0	L2	8	L2-8-1	9	YDSSTLES	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV3-1*01	65.7	Mo_IGKV3-1*01	28.6	L3	9	L3-9-2	11	LQVLIVVRT	BBAABABBB
E	kappa	Mus.musculus	Mo_IGKV3-1*01	65.7	Mo_IGKV3-1*01	83.3	L4	6	L4-6-1	10	GSGRDF	EBEABB
F	kappa	Mus.musculus	Mo_IGKV3-1*01	65.7	CDRLenMismatch	-1.0	L1	14	L1-14-*	-1	QASNNITTYssfIF	BBABBABAABBABB
F	kappa	Mus.musculus	Mo_IGKV3-1*01	65.7	Mo_IGKV3-1*01	50.0	L2	8	L2-8-1	10	YDSSTLES	BLLABBBB
F	kappa	Mus.musculus	Mo_IGKV3-1*01	65.7	Mo_IGKV3-1*01	28.6	L3	9	L3-9-2	10	LQVLIVVRT	BBAABABBB
F	kappa	Mus.musculus	Mo_IGKV3-1*01	65.7	Mo_IGKV3-1*01	83.3	L4	6	L4-6-1	11	GSGRDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022