PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7K9Z

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L1	17	L1-17-*	-1	KSSQSVlyssnnKNYLA	BBABBABBAABBBBBBB
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	19	YWASTRES	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L3	9	L3-9-cis7-1	8	QQYYSTPPT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV1-46*02	98.6	Hu_IGHV1-46*02	53.8	H1	13	H1-13-*	-1	KASGGTFSTYGIS	BBBLEBAAAAEBB
B	heavy	Homo.sapiens	Hu_IGHV1-46*02	98.6	Hu_IGHV1-46*02	40.0	H2	10	H2-10-*	-1	WISPNSGGTD	BBBAAAEEBB
B	heavy	Homo.sapiens	Hu_IGHV1-46*02	98.6	Hu_IGHV1-46*02	50.0	H3	12	H3-12-*	-1	ASDPRDDIAGGY	BBBAABAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-46*02	98.6	Hu_IGHV1-46*02	100.0	H4	8	H4-8-*	-1	RDTSTSTV	BBABLLBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*06	100.0	Hu_IGHV1-69*06	76.9	H1	13	H1-13-*	-1	KASGYTFTSYGIS	BBBLBBBLABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*06	100.0	Hu_IGHV1-69*06	80.0	H2	10	H2-10-1	7	GIIPMFGTTN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*06	100.0	Hu_IGHV1-69*06	100.0	H3	10	H3-10-*	-1	ARDRGDTIDY	BBBBAABBAB
H	heavy	Homo.sapiens	Hu_IGHV1-69*06	100.0	Hu_IGHV1-69*06	100.0	H4	8	H4-8-1	5	ADKSTSTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-NL1*01	97.1	Hu_IGKV1-NL1*01	81.8	L1	11	L1-11-1	21	RASQGISNNLN	BBABBAEBABB
L	kappa	Homo.sapiens	Hu_IGKV1-NL1*01	97.1	Hu_IGKV1-NL1*01	87.5	L2	8	L2-8-1	17	YAASSLES	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-NL1*01	97.1	Hu_IGKV1-NL1*01	42.9	L3	9	L3-9-cis7-1	17	QQGNGFPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-NL1*01	97.1	Hu_IGKV1-NL1*01	83.3	L4	6	L4-6-1	5	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022