PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7K9J

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1-55*01	93.2	Mo_IGHV1-55*01	100.0	H1	13	H1-13-1	12	KASGYTFTSYWIT	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-55*01	93.2	Mo_IGHV1-55*01	90.0	H2	10	H2-10-*	-1	DIYPGSGSTK	BBBAABBBBB
H	heavy	Mus.musculus	Mo_IGHV1-55*01	93.2	Mo_IGHV1-55*01	100.0	H3	13	H3-13-*	-1	ARWDFYGSRTFDY	BBBBAABALBBAB
H	heavy	Mus.musculus	Mo_IGHV1-55*01	93.2	Mo_IGHV1-55*01	87.5	H4	8	H4-8-1	11	VDTSSTTA	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV1-55*01	93.2	Mo_IGHV1-55*01	100.0	H1	13	H1-13-1	12	KASGYTFTSYWIT	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1-55*01	93.2	Mo_IGHV1-55*01	90.0	H2	10	H2-10-*	-1	DIYPGSGSTK	BBBAABBBBB
I	heavy	Mus.musculus	Mo_IGHV1-55*01	93.2	Mo_IGHV1-55*01	100.0	H3	13	H3-13-*	-1	ARWDFYGSRTFDY	BBBBAABALBBAB
I	heavy	Mus.musculus	Mo_IGHV1-55*01	93.2	Mo_IGHV1-55*01	87.5	H4	8	H4-8-1	11	VDTSSTTA	BBAAALBB
J	heavy	Mus.musculus	Mo_IGHV1-55*01	93.2	Mo_IGHV1-55*01	100.0	H1	13	H1-13-1	12	KASGYTFTSYWIT	BBBLBBAAABBBB
J	heavy	Mus.musculus	Mo_IGHV1-55*01	93.2	Mo_IGHV1-55*01	90.0	H2	10	H2-10-*	-1	DIYPGSGSTK	BBBAABBBBB
J	heavy	Mus.musculus	Mo_IGHV1-55*01	93.2	Mo_IGHV1-55*01	100.0	H3	13	H3-13-*	-1	ARWDFYGSRTFDY	BBBBAABALBBAB
J	heavy	Mus.musculus	Mo_IGHV1-55*01	93.2	Mo_IGHV1-55*01	87.5	H4	8	H4-8-1	11	VDTSSTTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV5-48*01	98.6	Mo_IGKV5-48*01	81.8	L1	11	L1-11-1	21	RASQNIGTIIH	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV5-48*01	98.6	Mo_IGKV5-48*01	87.5	L2	8	L2-8-*	-1	KYASESVS	ABAABBBA
L	kappa	Mus.musculus	Mo_IGKV5-48*01	98.6	Mo_IGKV5-48*01	85.7	L3	9	L3-9-cis7-1	12	QQSSSWPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV5-48*01	98.6	Mo_IGKV5-48*01	100.0	L4	6	L4-6-1	16	GSGTDF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV5-48*01	98.6	Mo_IGKV5-48*01	81.8	L1	11	L1-11-1	21	RASQNIGTIIH	BBABBAEABBB
M	kappa	Mus.musculus	Mo_IGKV5-48*01	98.6	Mo_IGKV5-48*01	87.5	L2	8	L2-8-*	-1	KYASESVS	ABAABBBA
M	kappa	Mus.musculus	Mo_IGKV5-48*01	98.6	Mo_IGKV5-48*01	85.7	L3	9	L3-9-cis7-1	12	QQSSSWPLT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV5-48*01	98.6	Mo_IGKV5-48*01	100.0	L4	6	L4-6-1	16	GSGTDF	EBEABB
N	kappa	Mus.musculus	Mo_IGKV5-48*01	98.6	Mo_IGKV5-48*01	81.8	L1	11	L1-11-1	21	RASQNIGTIIH	BBABBAEABBB
N	kappa	Mus.musculus	Mo_IGKV5-48*01	98.6	Mo_IGKV5-48*01	87.5	L2	8	L2-8-*	-1	KYASESVS	ABAABBBA
N	kappa	Mus.musculus	Mo_IGKV5-48*01	98.6	Mo_IGKV5-48*01	85.7	L3	9	L3-9-cis7-1	12	QQSSSWPLT	BBAABBbBB
N	kappa	Mus.musculus	Mo_IGKV5-48*01	98.6	Mo_IGKV5-48*01	100.0	L4	6	L4-6-1	16	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022