PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7K8S

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-30*18	98.6	Hu_IGHV3-30*18	92.3	H1	13	H1-13-1	11	AASGFTFSIYGMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*18	98.6	Hu_IGHV3-30*18	100.0	H2	10	H2-10-2	9	VISYDGSNKY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*18	98.6	Hu_IGHV3-30*18	100.0	H3	17	H3-17-*	-1	AKEGRPSdivVVVAFDY
H	heavy	Homo.sapiens	Hu_IGHV3-30*18	98.6	Hu_IGHV3-30*18	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBALAABB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	15	YAASSLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L3	9	L3-9-cis7-1	16	QQSYSTPRT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV3-30*18	98.6	Hu_IGHV3-30*18	92.3	H1	13	H1-13-1	11	AASGFTFSIYGMH	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV3-30*18	98.6	Hu_IGHV3-30*18	100.0	H2	10	H2-10-2	10	VISYDGSNKY	BBBAALABBB
M	heavy	Homo.sapiens	Hu_IGHV3-30*18	98.6	Hu_IGHV3-30*18	100.0	H3	17	H3-17-*	-1	AKEGRPSdivVVVAFDY
M	heavy	Homo.sapiens	Hu_IGHV3-30*18	98.6	Hu_IGHV3-30*18	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBALAABB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	17	YAASSLQS	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L3	9	L3-9-cis7-1	15	QQSYSTPRT	BBAABBbBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV3-30*18	98.6	Hu_IGHV3-30*18	92.3	H1	13	H1-13-1	11	AASGFTFSIYGMH	BBBLBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV3-30*18	98.6	Hu_IGHV3-30*18	100.0	H2	10	H2-10-2	9	VISYDGSNKY	BBBAALABBB
O	heavy	Homo.sapiens	Hu_IGHV3-30*18	98.6	Hu_IGHV3-30*18	100.0	H3	17	H3-17-*	-1	AKEGRPSdivVVVAFDY
O	heavy	Homo.sapiens	Hu_IGHV3-30*18	98.6	Hu_IGHV3-30*18	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBALAABB
P	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	17	YAASSLQS	BLLABBBB
P	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L3	9	L3-9-cis7-1	13	QQSYSTPRT	BBAABBbBB
P	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022