PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7K7I

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	92.3	H1	13	H1-13-*	-1	AASGFAFSTYDMS	BBAABBAABLBBB
H	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	90.0	H2	10	H2-10-2	17	TISGGGSYTY	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	50.0	H3	14	H3-14-*	-1	VRQYYGSSNYGMDY	BBBBLLBAABBBBL
H	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	100.0	H4	8	H4-8-*	-1	RDNARNTL	BBBLALBA
J	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	92.3	H1	13	H1-13-*	-1	AASGFAFSTYDMS	BBAABBAABLBBB
J	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	90.0	H2	10	H2-10-2	23	TISGGGSYTY	BBBAALABBB
J	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	50.0	H3	14	H3-14-*	-1	VRQYYGSSNYGMDY	BBBBLLBAABBBAB
J	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	100.0	H4	8	H4-8-*	-1	RDNARNTL	BBBLALBB
K	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	100.0	L1	11	L1-11-1	25	RASQSIGTSIH	BBABBAEABBB
K	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	75.0	L2	8	L2-8-1	26	QYASQSIS	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	57.1	L3	9	L3-9-cis7-1	25	QHTNGWPYT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	100.0	L4	6	L4-6-1	16	GSGTDF	EBEABB
L	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	100.0	L1	11	L1-11-1	24	RASQSIGTSIH	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	75.0	L2	8	L2-8-1	27	QYASQSIS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	57.1	L3	9	L3-9-cis7-1	22	QHTNGWPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB
M	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	92.3	H1	13	H1-13-*	-1	AASGFAFSTYDMS	BBAABBAABLBBB
M	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	90.0	H2	10	H2-10-2	24	TISGGGSYTY	BBBAALABBB
M	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	50.0	H3	14	H3-14-*	-1	VRQYYGSSNYGMDY	BBALALBAABBBBB
M	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	100.0	H4	8	H4-8-*	-1	RDNARNTL	BBAAALBA
N	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	100.0	L1	11	L1-11-1	29	RASQSIGTSIH	BBABBAEABBB
N	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	75.0	L2	8	L2-8-1	27	QYASQSIS	BLLABBBB
N	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	57.1	L3	9	L3-9-cis7-1	23	QHTNGWPYT	BBAABBbBB
N	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
P	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	92.3	H1	13	H1-13-*	-1	AASGFAFSTYDMS	BBAABBAABLBBB
P	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	90.0	H2	10	H2-10-2	24	TISGGGSYTY	BBBAALABBB
P	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	50.0	H3	14	H3-14-*	-1	VRQYYGSSNYGMDY	BBBBLLBAAAEBAB
P	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	100.0	H4	8	H4-8-*	-1	RDNARNTL	BBBLALBA
Q	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	100.0	L1	11	L1-11-1	26	RASQSIGTSIH	BBABBAEABBB
Q	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	75.0	L2	8	L2-8-1	27	QYASQSIS	BLLABBBB
Q	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	57.1	L3	9	L3-9-cis7-1	22	QHTNGWPYT	BBAABBbBB
Q	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	100.0	L4	6	L4-6-1	17	GSGTDF	EBEABB
X	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	92.3	H1	13	H1-13-*	-1	AASGFAFSTYDMS	BBAABBAABLBBB
X	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	90.0	H2	10	H2-10-2	16	TISGGGSYTY	BBBAALABBB
X	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	50.0	H3	14	H3-14-*	-1	VRQYYGSSNYGMDY	BALBLLBAAAEBBB
X	heavy	Mus.musculus	Mo_IGHV5-9*02	97.2	Mo_IGHV5-9*02	100.0	H4	8	H4-8-*	-1	RDNARNTL	BBBLALBA
Y	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	100.0	L1	11	L1-11-1	23	RASQSIGTSIH	BBABBAEABBB
Y	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	75.0	L2	8	L2-8-1	25	QYASQSIS	BLLABBBB
Y	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	57.1	L3	9	L3-9-cis7-1	27	QHTNGWPYT	BBAABBbBB
Y	kappa	Mus.musculus	Mo_IGKV5-48*01	94.2	Mo_IGKV5-48*01	100.0	L4	6	L4-6-1	17	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022