PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7K22

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H1	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H1	13	H1-13-1	11	SASGFTFSSYGMH	BBBLBBAAABBBB
H1	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	66.7	H2	9	H2-9-*	-1	YISSASDTF	BBBABBBBB
H1	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H3	16	H3-16-*	-1	ARTRYPTdhFYDWFPY
H1	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H4	8	H4-8-*	-1	RDNAKNTL	BBBLALBB
H2	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H1	13	H1-13-1	11	SASGFTFSSYGMH	BBBLBBAAABBBB
H2	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	66.7	H2	9	H2-9-*	-1	YISSASDTF	BBBABBBBB
H2	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H3	16	H3-16-*	-1	ARTRYPTdhFYDWFPY
H2	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H4	8	H4-8-*	-1	RDNAKNTL	BBBLALBB
H3	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H1	13	H1-13-1	11	SASGFTFSSYGMH	BBBLBBAAABBBB
H3	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	66.7	H2	9	H2-9-*	-1	YISSASDTF	BBBABBBBB
H3	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H3	16	H3-16-*	-1	ARTRYPTdhFYDWFPY
H3	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H4	8	H4-8-*	-1	RDNAKNTL	BBBLALBB
H4	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H1	13	H1-13-1	11	SASGFTFSSYGMH	BBBLBBAAABBBB
H4	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	66.7	H2	9	H2-9-*	-1	YISSASDTF	BBBABBBBB
H4	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H3	16	H3-16-*	-1	ARTRYPTdhFYDWFPY
H4	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H4	8	H4-8-*	-1	RDNAKNTL	BBBLALBB
H5	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H1	13	H1-13-1	11	SASGFTFSSYGMH	BBBLBBAAABBBB
H5	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	66.7	H2	9	H2-9-*	-1	YISSASDTF	BBBABBBBB
H5	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H3	16	H3-16-*	-1	ARTRYPTdhFYDWFPY
H5	heavy	Rattus.norvegicus	Ra_IGHV5-62*01	97.1	Ra_IGHV5-62*01	100.0	H4	8	H4-8-*	-1	RDNAKNTL	BBBLALBB
L1	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	81.8	L1	11	L1-11-*	-1	RASQNVYSNVD	BBABBBAABBB
L1	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	100.0	L2	8	L2-8-1	20	YKASNRYT	BLLABBBB
L1	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	57.1	L3	9	L3-9-cis7-1	21	LQSNAFPFT	BBBABBbBB
L1	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	83.3	L4	6	L4-6-1	12	GSGTYF	EBEABB
L2	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	81.8	L1	11	L1-11-*	-1	RASQNVYSNVD	BBABBBAABBB
L2	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	100.0	L2	8	L2-8-1	20	YKASNRYT	BLLABBBB
L2	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	57.1	L3	9	L3-9-cis7-1	21	LQSNAFPFT	BBBABBbBB
L2	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	83.3	L4	6	L4-6-1	12	GSGTYF	EBEABB
L3	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	81.8	L1	11	L1-11-*	-1	RASQNVYSNVD	BBABBBAABBB
L3	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	100.0	L2	8	L2-8-1	20	YKASNRYT	BLLABBBB
L3	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	57.1	L3	9	L3-9-cis7-1	21	LQSNAFPFT	BBBABBbBB
L3	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	83.3	L4	6	L4-6-1	12	GSGTYF	EBEABB
L4	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	81.8	L1	11	L1-11-*	-1	RASQNVYSNVD	BBABBBAABBB
L4	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	100.0	L2	8	L2-8-1	20	YKASNRYT	BLLABBBB
L4	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	57.1	L3	9	L3-9-cis7-1	21	LQSNAFPFT	BBBABBbBB
L4	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	83.3	L4	6	L4-6-1	12	GSGTYF	EBEABB
L5	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	81.8	L1	11	L1-11-*	-1	RASQNVYSNVD	BBABBBAABBB
L5	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	100.0	L2	8	L2-8-1	20	YKASNRYT	BLLABBBB
L5	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	57.1	L3	9	L3-9-cis7-1	21	LQSNAFPFT	BBBABBbBB
L5	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	91.3	Ra_IGKV6S10*01	83.3	L4	6	L4-6-1	12	GSGTYF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022