PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7JOO

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-20*04	98.6	Hu_IGHV3-20*04	84.6	H1	13	H1-13-*	-1	VASGVTFDDYGMS	BBAABBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-20*04	98.6	Hu_IGHV3-20*04	80.0	H2	10	H2-10-2	12	GINWNGGDTD	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-20*04	98.6	Hu_IGHV3-20*04	100.0	H3	17	H3-17-*	-1	ARDFYGSgsyYHVPFDY
H	heavy	Homo.sapiens	Hu_IGHV3-20*04	98.6	Hu_IGHV3-20*04	100.0	H4	8	H4-8-1	6	RDNAKNSL	BBAAALBB
K	heavy	Lama.glama	La_IGHV1S3*01_VHH	61.1	La_IGHV1S3*01_VHH	23.1	H1	13	H1-13-1	10	AAAAAAAAAAAAA	BBBLBBAAABBBB
K	heavy	Lama.glama	La_IGHV1S3*01_VHH	61.1	CDRLenMismatch	-1.0	H2	10	H2-10-*	-1	AAAAAAAAAA	BBBBBLAEBB
K	heavy	Lama.glama	La_IGHV1S3*01_VHH	61.1	La_IGHV1S3*01_VHH	50.0	H3	14	H3-14-*	-1	AAAAAAAAAAAAAA	BBBABAALALBBAB
K	heavy	Lama.glama	La_IGHV1S3*01_VHH	61.1	La_IGHV1S3*01_VHH	25.0	H4	8	H4-8-1	6	ADAAAAAA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	91.7	L1	12	L1-12-1	9	RASQSVSrSYLA	BBABBBBAABBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	5	YGASSRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	57.1	L3	9	L3-9-cis7-1	8	HQYDMSPFT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022