PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7JLN

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1S70*01	88.5	Mo_IGHV1S70*01	92.3	H1	13	H1-13-1	12	KTSGYTFTSYWIN	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1S70*01	88.5	Mo_IGHV1S70*01	70.0	H2	10	H2-10-1	10	NIWPSDSYTN	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1S70*01	88.5	Mo_IGHV1S70*01	0.0	H3	13	H3-13-*	-1	TRDFGASYVGFAY	BBBAEAABBEBAB
A	heavy	Mus.musculus	Mo_IGHV1S70*01	88.5	Mo_IGHV1S70*01	87.5	H4	8	H4-8-1	8	VDKSSNTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV8-28*01	97.1	Mo_IGKV8-28*01	100.0	L1	17	L1-17-1	13	KSSQSLlnsgnqKNYLA	BBABBABBAAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV8-28*01	97.1	Mo_IGKV8-28*01	100.0	L2	8	L2-8-1	11	YGASTRES	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV8-28*01	97.1	Mo_IGKV8-28*01	85.7	L3	9	L3-9-cis7-1	12	QNDESYPYT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV8-28*01	97.1	Mo_IGKV8-28*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H1	13	H1-13-1	9	KASGYTFTGYYMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H2	10	H2-10-1	11	WINPNSGGTN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H3	14	H3-14-*	-1	ARGKNSDYNWDFQH	BBBABAABAABBAB
H	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H4	8	H4-8-1	9	RDTSISTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L1	11	L1-11-1	14	RASQSVSSYLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	13	YDASNRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	0.0	L3	5	L3-5-1	7	QQYEF	BBEAB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022