PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7JLK

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H1	13	H1-13-1	8	KASGYTFTGYYMH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H2	10	H2-10-1	10	WINPNSGGTN	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H3	14	H3-14-*	-1	ARGKNSDYNWDFQH	BBBABABBBABBAB
A	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H4	8	H4-8-1	10	RDTSISTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L1	11	L1-11-*	-1	RASQSVSSYLA	BBABBABABBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	7	YDASNRAT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	0.0	L3	5	L3-5-1	10	QQYEF	BBEAB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-2	17	GSGTDF	BBEABB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	94.5	Mo_IGHV9-3-1*01	84.6	H1	13	H1-13-1	8	KASGYTFTNYEIN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	94.5	Mo_IGHV9-3-1*01	100.0	H2	10	H2-10-1	11	WINTYTGEPT	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	94.5	Mo_IGHV9-3-1*01	100.0	H3	15	H3-15-*	-1	ARGDYYGSsSAWLPY
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	94.5	Mo_IGHV9-3-1*01	100.0	H4	8	H4-8-1	10	LETSASTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	100.0	L1	11	L1-11-1	8	KASQNVRTAVA	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	87.5	L2	8	L2-8-1	5	FLASNRHT	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	100.0	L3	9	L3-9-cis7-1	7	LQHWNYPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022