PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7JKM

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-9*01	94.5	Hu_IGHV3-9*01	92.3	H1	13	H1-13-1	7	AASGFTFDDYTMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-9*01	94.5	Hu_IGHV3-9*01	90.0	H2	10	H2-10-2	9	DISWNSGSIG	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-9*01	94.5	Hu_IGHV3-9*01	100.0	H3	17	H3-17-*	-1	AKDMSgygHYGKYGMDV
H	heavy	Homo.sapiens	Hu_IGHV3-9*01	94.5	Hu_IGHV3-9*01	100.0	H4	8	H4-8-1	4	RDNAKNSL	BBAAALBB
K	heavy	Lama.glama	La_IGHV1S3*01_VHH	89.0	La_IGHV1S3*01_VHH	61.5	H1	13	H1-13-1	19	AASGRTISRYAMS	BBBLBBAAABBBB
K	heavy	Lama.glama	La_IGHV1S3*01_VHH	89.0	CDRLenMismatch	-1.0	H2	10	H2-10-*	-1	TARRSGDGAF	BBBBBLAEBB
K	heavy	Lama.glama	La_IGHV1S3*01_VHH	89.0	La_IGHV1S3*01_VHH	0.0	H3	14	H3-14-*	-1	AIDSDTFYSGSYDY	BBBABAALALBBAB
K	heavy	Lama.glama	La_IGHV1S3*01_VHH	89.0	La_IGHV1S3*01_VHH	87.5	H4	8	H4-8-1	10	RDDAKNTV	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	82.6	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	7	RASQSIRSYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	82.6	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	6	YAASSLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	82.6	Hu_IGKV1-39*01	71.4	L3	10	L3-10-cis78-1	13	QQTYSNpPIT	BBAABBbbBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	82.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022