PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7E5S

#CDRs = 8; #Clusters = 17.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	kappa	Homo.sapiens	Hu_IGKV6D-21*02	89.7	Hu_IGKV6D-21*02	81.8	L1	11	L1-11-*	-1	RASQSISSNLH	BBBABBBABBB
D	kappa	Homo.sapiens	Hu_IGKV6D-21*02	89.7	Hu_IGKV6D-21*02	100.0	L2	8	L2-8-1	20	KYASQSIS	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV6D-21*02	89.7	Hu_IGKV6D-21*02	28.6	L3	9	L3-9-2	25	QQTNFWPYI	BBAABABBB
D	kappa	Homo.sapiens	Hu_IGKV6D-21*02	89.7	Hu_IGKV6D-21*02	100.0	L4	6	L4-6-2	26	GSGTDF	BBEABB
E	heavy	Homo.sapiens	Hu_IGHV1-69-2*01	86.3	Hu_IGHV1-69-2*01	69.2	H1	13	H1-13-1	17	KVSGYSFSNYYIH	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV1-69-2*01	86.3	Hu_IGHV1-69-2*01	40.0	H2	10	H2-10-*	-1	YIDPFNGGTS	BBBAABBBBB
E	heavy	Homo.sapiens	Hu_IGHV1-69-2*01	86.3	Hu_IGHV1-69-2*01	50.0	H3	13	H3-13-*	-1	ARSEYDPYYVMDY	BBBBAAAABBBAB
E	heavy	Homo.sapiens	Hu_IGHV1-69-2*01	86.3	Hu_IGHV1-69-2*01	100.0	H4	8	H4-8-1	19	ADTSTDTA	BBAAALBB
H	kappa	Homo.sapiens	Hu_IGKV6D-21*02	89.7	Hu_IGKV6D-21*02	81.8	L1	11	L1-11-*	-1	RASQSISSNLH	BBBABBBABBB
H	kappa	Homo.sapiens	Hu_IGKV6D-21*02	89.7	Hu_IGKV6D-21*02	100.0	L2	8	L2-8-1	20	KYASQSIS	BLLABBBB
H	kappa	Homo.sapiens	Hu_IGKV6D-21*02	89.7	Hu_IGKV6D-21*02	28.6	L3	9	L3-9-2	27	QQTNFWPYI	BBAABABBB
H	kappa	Homo.sapiens	Hu_IGKV6D-21*02	89.7	Hu_IGKV6D-21*02	100.0	L4	6	L4-6-1	31	GSGTDF	EBEABB
I	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H1	13	H1-13-1	24	AASGFTFSSYAMH	BBBEBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H2	10	H2-10-*	-1	VISYDGSNKY	BBBAABBBBB
I	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H3	12	H3-12-*	-1	ARHATLMNNKDI	BBBBBLABBABB
I	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H4	8	H4-8-1	13	RDNSKNTL	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H1	13	H1-13-1	24	AASGFTFSSYAMH	BBBEBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H2	10	H2-10-*	-1	VISYDGSNKY	BBBAABBBBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H3	12	H3-12-*	-1	ARHATLMNNKDI	BBBBBLABBABB
J	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H4	8	H4-8-1	14	RDNSKNTL	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBBAABBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	24	YAASSLQS	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L3	9	L3-9-cis7-1	14	QQSYSTPRT	BBAABBbBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	21	GSGTDF	EBEABB
L	heavy	Homo.sapiens	Hu_IGHV1-69-2*01	86.3	Hu_IGHV1-69-2*01	69.2	H1	13	H1-13-1	16	KVSGYSFSNYYIH	BBBLBBAAABBBB
L	heavy	Homo.sapiens	Hu_IGHV1-69-2*01	86.3	Hu_IGHV1-69-2*01	40.0	H2	10	H2-10-*	-1	YIDPFNGGTS	BBBAABBBBB
L	heavy	Homo.sapiens	Hu_IGHV1-69-2*01	86.3	Hu_IGHV1-69-2*01	50.0	H3	13	H3-13-*	-1	ARSEYDPYYVMDY	BBBBABAALBBAB
L	heavy	Homo.sapiens	Hu_IGHV1-69-2*01	86.3	Hu_IGHV1-69-2*01	100.0	H4	8	H4-8-1	19	ADTSTDTA	BBAAALBB
N	lambda	Homo.sapiens	Hu_IGLV1-51*01	97.0	Hu_IGLV1-51*01	100.0	L1	13	L1-13-1	11	SGSSSNIGNNYVS	BBBAAAAAABBBB
N	lambda	Homo.sapiens	Hu_IGLV1-51*01	97.0	Hu_IGLV1-51*01	100.0	L2	8	L2-8-1	24	YDNNKRPS	BLLABBBB
N	lambda	Homo.sapiens	Hu_IGLV1-51*01	97.0	Hu_IGLV1-51*01	100.0	L3	11	L3-11-1	16	GTWDSSLSAVV	BBBBAAALBBB
N	lambda	Homo.sapiens	Hu_IGLV1-51*01	97.0	Hu_IGLV1-51*01	100.0	L4	6	L4-6-2	16	KSGTSA	BBEABB
O	kappa	Homo.sapiens	Hu_IGKV3-11*01	92.8	Mo_IGKV3-2*01	100.0	L1	15	L1-15-*	-1	RASESVDNYgisfMN	BBBEBBEBAALBBEB
O	kappa	Homo.sapiens	Hu_IGKV3-11*01	92.8	Mo_IGKV3-2*01	100.0	L2	8	L2-8-*	-1	YAASNQGS	BLLABLAB
O	kappa	Homo.sapiens	Hu_IGKV3-11*01	92.8	Hu_IGKV3-11*01	42.9	L3	9	L3-9-*	-1	QQSKEVPRI	BBBLBEBAE
O	kappa	Homo.sapiens	Hu_IGKV3-11*01	92.8	Hu_IGKV3-11*01	100.0	L4	6	L4-6-2	20	GSGTDF	BBEABB
P	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	76.9	H1	13	H1-13-1	26	KVSGYTLPEVAMH	BBBLBBAAABBBB
P	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	90.0	H2	10	H2-10-*	-1	GFDPEDGETM	EBBABLLBBB
P	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	100.0	H3	14	H3-14-*	-1	ATTTPFSSSYWFDP	BBBBAAELBABAEB
P	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	100.0	H4	8	H4-8-1	16	EDTSTDTA	BBAAALBB
Q	lambda	Homo.sapiens	Hu_IGLV1-51*01	97.0	Hu_IGLV1-51*01	100.0	L1	13	L1-13-1	11	SGSSSNIGNNYVS	BBBAAAAAABBBB
Q	lambda	Homo.sapiens	Hu_IGLV1-51*01	97.0	Hu_IGLV1-51*01	100.0	L2	8	L2-8-1	22	YDNNKRPS	BLLABBBB
Q	lambda	Homo.sapiens	Hu_IGLV1-51*01	97.0	Hu_IGLV1-51*01	100.0	L3	11	L3-11-1	16	GTWDSSLSAVV	BBBBAAALBBB
Q	lambda	Homo.sapiens	Hu_IGLV1-51*01	97.0	Hu_IGLV1-51*01	100.0	L4	6	L4-6-2	16	KSGTSA	BBEABB
R	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Mo_IGHV5-6*01	84.6	H1	13	H1-13-1	15	AASGFTFTNYGMS	BBBLBBAAABBBB
R	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Mo_IGHV5-6*01	90.0	H2	10	H2-10-*	-1	EISSGGSYTY	BBBAABBALB
R	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	100.0	H3	13	H3-13-*	-1	ARFRYGGGGTVDY	BBBBBBBAALBAB
R	heavy	Homo.sapiens	Hu_IGHV3-7*01	90.4	Hu_IGHV3-7*01	87.5	H4	8	H4-8-1	20	RDNAKNTL	BBAAALBB
S	lambda	Homo.sapiens	Hu_IGLV1-51*01	97.0	Hu_IGLV1-51*01	100.0	L1	13	L1-13-1	11	SGSSSNIGNNYVS	BBBAAAAAABBBB
S	lambda	Homo.sapiens	Hu_IGLV1-51*01	97.0	Hu_IGLV1-51*01	100.0	L2	8	L2-8-1	17	YDNNKRPS	BLLABBBB
S	lambda	Homo.sapiens	Hu_IGLV1-51*01	97.0	Hu_IGLV1-51*01	100.0	L3	11	L3-11-1	16	GTWDSSLSAVV	BBBBAAALBBB
S	lambda	Homo.sapiens	Hu_IGLV1-51*01	97.0	Hu_IGLV1-51*01	100.0	L4	6	L4-6-2	16	KSGTSA	BBEABB
T	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBBAABBB
T	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	24	YAASSLQS	BLLABBBB
T	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L3	9	L3-9-cis7-1	13	QQSYSTPRT	BBAABBbBB
T	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	21	GSGTDF	EBEABB
U	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	76.9	H1	13	H1-13-1	26	KVSGYTLPEVAMH	BBBLBBAAABBBB
U	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	90.0	H2	10	H2-10-*	-1	GFDPEDGETM	EBBABLLBBB
U	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	100.0	H3	14	H3-14-*	-1	ATTTPFSSSYWFDP	BBBBAAELBABAEB
U	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	100.0	H4	8	H4-8-1	16	EDTSTDTA	BBAAALBB
V	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	76.9	H1	13	H1-13-1	26	KVSGYTLPEVAMH	BBBLBBAAABBBB
V	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	90.0	H2	10	H2-10-*	-1	GFDPEDGETM	EBBABLLBBB
V	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	100.0	H3	14	H3-14-*	-1	ATTTPFSSSYWFDP	BBBBAAELBABAEB
V	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	100.0	H4	8	H4-8-1	16	EDTSTDTA	BBAAALBB

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