PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7DPM

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	92.3	H1	13	H1-13-1	7	AASGFTFSSYAMN	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	90.0	H2	10	H2-10-2	8	VISGSGGSTY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	100.0	H3	20	H3-20-*	-1	AKGYYYDSsgyyfrEDAFDI
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L1	11	L1-11-1	6	RASQGISNYLA	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L2	8	L2-8-*	-1	YAASSLQS	AALABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L3	9	L3-9-cis7-1	8	LQHNSYPYT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L4	6	L4-6-1	10	GSGTEF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	92.3	H1	13	H1-13-1	7	AASGFTFSSYAMN	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	90.0	H2	10	H2-10-2	7	VISGSGGSTY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	100.0	H3	20	H3-20-*	-1	AKGYYYDSsgyyfrEDAFDI
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L1	11	L1-11-1	7	RASQGISNYLA	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L2	8	L2-8-*	-1	YAASSLQS	AALABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L3	9	L3-9-cis7-1	8	LQHNSYPYT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L4	6	L4-6-1	10	GSGTEF	EBEABB
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	92.3	H1	13	H1-13-1	7	AASGFTFSSYAMN	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	90.0	H2	10	H2-10-2	7	VISGSGGSTY	BBBAALABBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	100.0	H3	20	H3-20-*	-1	AKGYYYDSsgyyfrEDAFDI
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
H	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L1	11	L1-11-1	6	RASQGISNYLA	BBABBAEABBB
H	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L2	8	L2-8-*	-1	YAASSLQS	AALABBBB
H	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L3	9	L3-9-cis7-1	7	LQHNSYPYT	BBAABBbBB
H	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L4	6	L4-6-1	10	GSGTEF	EBEABB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	92.3	H1	13	H1-13-1	7	AASGFTFSSYAMN	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	90.0	H2	10	H2-10-2	7	VISGSGGSTY	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	100.0	H3	20	H3-20-*	-1	AKGYYYDSsgyyfrEDAFDI
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	97.3	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L1	11	L1-11-1	7	RASQGISNYLA	BBABBAEABBB
K	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L2	8	L2-8-*	-1	YAASSLQS	AALABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L3	9	L3-9-cis7-1	8	LQHNSYPYT	BBAABBbBB
K	kappa	Homo.sapiens	Hu_IGKV1-17*03	100.0	Hu_IGKV1-17*03	100.0	L4	6	L4-6-1	10	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022