PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7DKJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	69.2	H1	13	H1-13-*	-1	GTSGFTLTDDYMT	BBBEBBABAABBB
C	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	83.3	H2	12	H2-12-*	-1	FIRDraNGYTTE	BBBBAAAEBBBB
C	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	66.7	H3	13	H3-13-*	-1	ARPKGYFPYAMDY	BBBABABBABBAB
C	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	87.5	H4	8	H4-8-1	13	RDNSQSIV	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L1	11	L1-11-*	-1	RASENIYSNLA	BBABBBAABBB
D	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L2	8	L2-8-*	-1	YAATNLAD	BLLABBBA
D	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L3	9	L3-9-2	26	QHFWGTPWT	BBAABABBB
D	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L4	6	L4-6-1	20	GSGTQY	EBEABB
G	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	69.2	H1	13	H1-13-*	-1	GTSGFTLTDDYMT	BBBEBBABAABBB
G	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	83.3	H2	12	H2-12-*	-1	FIRDraNGYTTE	BBBBAAAEBBBB
G	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	66.7	H3	13	H3-13-*	-1	ARPKGYFPYAMDY	BBBABABBABBAB
G	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	87.5	H4	8	H4-8-1	13	RDNSQSIV	BBAAALBB
H	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L1	11	L1-11-*	-1	RASENIYSNLA	BBABBBAABBB
H	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L2	8	L2-8-*	-1	YAATNLAD	BLLABBBA
H	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L3	9	L3-9-2	26	QHFWGTPWT	BBAABABBB
H	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L4	6	L4-6-1	20	GSGTQY	EBEABB
K	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	69.2	H1	13	H1-13-*	-1	GTSGFTLTDDYMT	BBBEBBABAABBB
K	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	83.3	H2	12	H2-12-*	-1	FIRDraNGYTTE	BBBBAAAEBBBB
K	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	66.7	H3	13	H3-13-*	-1	ARPKGYFPYAMDY	BBBABABBABBAB
K	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	87.5	H4	8	H4-8-1	13	RDNSQSIV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L1	11	L1-11-*	-1	RASENIYSNLA	BBABBBAABBB
L	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L2	8	L2-8-*	-1	YAATNLAD	BLLABBBA
L	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L3	9	L3-9-2	26	QHFWGTPWT	BBAABABBB
L	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L4	6	L4-6-1	20	GSGTQY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022