PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7DK4

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
a	heavy	Mus.musculus	Mo_IGHV2-5-1*01	98.6	Mo_IGHV2-5-1*01	100.0	H1	13	H1-13-1	13	TVSGFSLTSYGVH	BBBLBBAAABBBB
a	heavy	Mus.musculus	Mo_IGHV2-5-1*01	98.6	Mo_IGHV2-5-1*01	77.8	H2	9	H2-9-*	-1	VMWRGGNTD	BBBBLBBBB
a	heavy	Mus.musculus	Mo_IGHV2-5-1*01	98.6	Mo_IGHV2-5-1*01	100.0	H3	11	H3-11-1	21	AKNGGAHAMDF	BBBBABLBBAB
a	heavy	Mus.musculus	Mo_IGHV2-5-1*01	98.6	Mo_IGHV2-5-1*01	100.0	H4	8	H4-8-1	16	KDNSKSQV	BBAAALBB
b	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	93.3	L1	15	L1-15-*	-1	RASESVDSYgnsfLH	BBABbBLAAABABBB
b	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	100.0	L2	8	L2-8-*	-1	YLASNLES	BLLABBBB
b	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	100.0	L3	9	L3-9-cis7-1	26	QQNNEDPFT	BBAABBbBB
b	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	100.0	L4	6	L4-6-3	20	GSRTDF	EBAABB
c	heavy	Mus.musculus	Mo_IGHV2-5-1*01	98.6	Mo_IGHV2-5-1*01	100.0	H1	13	H1-13-1	12	TVSGFSLTSYGVH	BBBLBBAAABBBB
c	heavy	Mus.musculus	Mo_IGHV2-5-1*01	98.6	Mo_IGHV2-5-1*01	77.8	H2	9	H2-9-*	-1	VMWRGGNTD	BBBBLBBBB
c	heavy	Mus.musculus	Mo_IGHV2-5-1*01	98.6	Mo_IGHV2-5-1*01	100.0	H3	11	H3-11-1	22	AKNGGAHAMDF	BBBBABLBBAB
c	heavy	Mus.musculus	Mo_IGHV2-5-1*01	98.6	Mo_IGHV2-5-1*01	100.0	H4	8	H4-8-1	20	KDNSKSQV	BBAAALBB
d	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	93.3	L1	15	L1-15-*	-1	RASESVDSYgnsfLH	BBABbBLAAABABBB
d	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	100.0	L2	8	L2-8-1	26	YLASNLES	BLLABBBB
d	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	100.0	L3	9	L3-9-cis7-1	25	QQNNEDPFT	BBAABBbBB
d	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	100.0	L4	6	L4-6-3	18	GSRTDF	EBAABB
e	heavy	Mus.musculus	Mo_IGHV2-5-1*01	98.6	Mo_IGHV2-5-1*01	100.0	H1	13	H1-13-1	18	TVSGFSLTSYGVH	BBBLBBAAABBBB
e	heavy	Mus.musculus	Mo_IGHV2-5-1*01	98.6	Mo_IGHV2-5-1*01	77.8	H2	9	H2-9-*	-1	VMWRGGNTD	BBBBLBBBB
e	heavy	Mus.musculus	Mo_IGHV2-5-1*01	98.6	Mo_IGHV2-5-1*01	100.0	H3	11	H3-11-1	21	AKNGGAHAMDF	BBBBABLBBAB
e	heavy	Mus.musculus	Mo_IGHV2-5-1*01	98.6	Mo_IGHV2-5-1*01	100.0	H4	8	H4-8-1	17	KDNSKSQV	BBAAALBB
f	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	93.3	L1	15	L1-15-*	-1	RASESVDSYgnsfLH	BBABbBLAAABABBB
f	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	100.0	L2	8	L2-8-1	26	YLASNLES	BLLABBBB
f	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	100.0	L3	9	L3-9-cis7-1	25	QQNNEDPFT	BBAABBbBB
f	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	100.0	L4	6	L4-6-3	22	GSRTDF	EBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022