PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7D5Z

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	72.7	L1	11	L1-11-*	-1	RASQAIRNNLA	BBABBAAABBB
C	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	62.5	L2	8	L2-8-*	-1	YAASTLED	AALABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	71.4	L3	9	L3-9-cis7-1	15	LQHSTYPWT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	66.7	L4	6	L4-6-1	17	GFGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	61.5	H1	13	H1-13-1	12	VTSGFTFSYYPIH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	30.0	H2	10	H2-10-2	17	MMSFDGTSDH	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	100.0	H3	14	H3-14-*	-1	ARGGWKWPGGAFDV	BBBLLLAABBBBBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	87.5	H4	8	H4-8-1	14	RDNSRNTL	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	72.7	L1	11	L1-11-*	-1	RASQAIRNNLA	BBABBAAABBB
G	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	62.5	L2	8	L2-8-*	-1	YAASTLED	AALABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	71.4	L3	9	L3-9-cis7-1	15	LQHSTYPWT	BBAABBbBB
G	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	66.7	L4	6	L4-6-1	18	GFGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	61.5	H1	13	H1-13-1	11	VTSGFTFSYYPIH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	30.0	H2	10	H2-10-2	17	MMSFDGTSDH	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	100.0	H3	14	H3-14-*	-1	ARGGWKWPGGAFDV	BBBLLLAABBEBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	87.5	H4	8	H4-8-1	13	RDNSRNTL	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	72.7	L1	11	L1-11-*	-1	RASQAIRNNLA	BBABBAAABBB
K	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	62.5	L2	8	L2-8-*	-1	YAASTLED	AALABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	71.4	L3	9	L3-9-cis7-1	16	LQHSTYPWT	BBAABBbBB
K	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	66.7	L4	6	L4-6-1	17	GFGTDF	EBEABB
L	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	61.5	H1	13	H1-13-1	12	VTSGFTFSYYPIH	BBBLBBAAABBBB
L	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	30.0	H2	10	H2-10-2	17	MMSFDGTSDH	BBBAALABBB
L	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	100.0	H3	14	H3-14-*	-1	ARGGWKWPGGAFDV	BBBLLLAABBBBBB
L	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	87.5	H4	8	H4-8-1	14	RDNSRNTL	BBAAALBB
O	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	72.7	L1	11	L1-11-*	-1	RASQAIRNNLA	BBABBAAABBB
O	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	62.5	L2	8	L2-8-*	-1	YAASTLED	AALABBBB
O	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	71.4	L3	9	L3-9-cis7-1	15	LQHSTYPWT	BBAABBbBB
O	kappa	Homo.sapiens	Hu_IGKV1-17*01	87.0	Hu_IGKV1-17*01	66.7	L4	6	L4-6-1	17	GFGTDF	EBEABB
P	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	61.5	H1	13	H1-13-1	12	VTSGFTFSYYPIH	BBBLBBAAABBBB
P	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	30.0	H2	10	H2-10-2	18	MMSFDGTSDH	BBBAALABBB
P	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	100.0	H3	14	H3-14-*	-1	ARGGWKWPGGAFDV	BBBLLLAABBBBBB
P	heavy	Homo.sapiens	Hu_IGHV3-30*10	78.1	Hu_IGHV3-30*10	87.5	H4	8	H4-8-1	15	RDNSRNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022