PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7CWU

#CDRs = 8; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
F	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L1	13	L1-13-1	11	SGSSSNIGNNYVS	BBBAAAAAABBBB
F	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L2	8	L2-8-1	21	YDNNKRPS	BLLABBBB
F	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L3	11	L3-11-1	16	GTWDSSLSAVV	BBBBAAALBBB
F	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L4	6	L4-6-2	16	KSGTSA	BBEABB
G	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L1	13	L1-13-1	11	SGSSSNIGNNYVS	BBBAAAAAABBBB
G	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L2	8	L2-8-1	21	YDNNKRPS	BLLABBBB
G	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L3	11	L3-11-1	16	GTWDSSLSAVV	BBBBAAALBBB
G	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L4	6	L4-6-2	16	KSGTSA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H1	13	H1-13-1	24	AASGFTFSSYAMH	BBBEBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H2	10	H2-10-*	-1	VISYDGSNKY	BBBAABBBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H3	12	H3-12-*	-1	ARHATLMNNKDI	BBBBBLABBABB
H	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H4	8	H4-8-1	13	RDNSKNTL	BBAAALBB
I	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L1	13	L1-13-1	11	SGSSSNIGNNYVS	BBBAAAAAABBBB
I	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L2	8	L2-8-1	20	YDNNKRPS	BLLABBBB
I	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L3	11	L3-11-1	16	GTWDSSLSAVV	BBBBAAALBBB
I	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L4	6	L4-6-2	16	KSGTSA	BBEABB
J	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	76.9	H1	13	H1-13-1	26	KVSGYTLPEVAMH	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	90.0	H2	10	H2-10-*	-1	GFDPEDGETM	EBBABLLBBB
J	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	100.0	H3	14	H3-14-*	-1	ATTTPFSSSYWFDP	BBBBABEBBABAEB
J	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	100.0	H4	8	H4-8-1	16	EDTSTDTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBBAABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L2	8	L2-8-*	-1	YAASSLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L3	9	L3-9-cis7-1	14	QQSYSTPRT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H1	13	H1-13-1	24	AASGFTFSSYAMH	BBBEBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H2	10	H2-10-*	-1	VISYDGSNKY	BBBAABBBBB
M	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H3	12	H3-12-*	-1	ARHATLMNNKDI	BBBBBLABBABB
M	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H4	8	H4-8-1	13	RDNSKNTL	BBAAALBB
N	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	76.9	H1	13	H1-13-1	26	KVSGYTLPEVAMH	BBBLBBAAABBBB
N	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	90.0	H2	10	H2-10-*	-1	GFDPEDGETM	EBBABLLBBB
N	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	100.0	H3	14	H3-14-*	-1	ATTTPFSSSYWFDP	BBBBAABBBABAEB
N	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	100.0	H4	8	H4-8-1	16	EDTSTDTA	BBAAALBB
O	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H1	13	H1-13-1	24	AASGFTFSSYAMH	BBBEBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H2	10	H2-10-*	-1	VISYDGSNKY	BBBAABBBBB
O	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H3	12	H3-12-*	-1	ARHATLMNNKDI	BBBBBLABBABB
O	heavy	Homo.sapiens	Hu_IGHV3-30*01	100.0	Hu_IGHV3-30*01	100.0	H4	8	H4-8-1	13	RDNSKNTL	BBAAALBB
P	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	76.9	H1	13	H1-13-1	26	KVSGYTLPEVAMH	BBBLBBAAABBBB
P	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	90.0	H2	10	H2-10-*	-1	GFDPEDGETM	EBBABLLBBB
P	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	100.0	H3	14	H3-14-*	-1	ATTTPFSSSYWFDP	BBBBAABALABBBA
P	heavy	Homo.sapiens	Hu_IGHV1-24*01	97.1	Hu_IGHV1-24*01	100.0	H4	8	H4-8-1	16	EDTSTDTA	BBAAALBB
R	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBBAABBB
R	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L2	8	L2-8-*	-1	YAASSLQS	BLLABBBB
R	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L3	9	L3-9-cis7-1	14	QQSYSTPRT	BBAABBbBB
R	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBBAABBB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L2	8	L2-8-*	-1	YAASSLQS	BLLABBBB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L3	9	L3-9-cis7-1	14	QQSYSTPRT	BBAABBbBB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022