PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7BM5

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	72.7	L1	11	L1-11-*	-1	RASEDIHSRLA	BBABBBBLBBB
A	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	100.0	L2	8	L2-8-*	-1	YNANSLHT	ABAABBBA
A	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	85.7	L3	10	L3-10-*	-1	LQYYNYpPYT	BBAABABbBB
A	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	83.3	L4	6	L4-6-1	21	GSGTQF	EBEABB
B	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	92.3	H1	13	H1-13-*	-1	VASRFTFSNYGMN	BBAABALAABBBB
B	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	40.0	H2	10	H2-10-2	14	YIGSTSSHIY	BBBAALABBB
B	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	0.0	H3	13	H3-13-*	-1	VGHVRKLGAFFDY	BBBALBLBABBAB
B	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	87.5	H4	8	H4-8-*	-1	RDNAKNTL	BBABLLBB
C	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	72.7	L1	11	L1-11-*	-1	RASEDIHSRLA	BBABBBBLBBB
C	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	100.0	L2	8	L2-8-*	-1	YNANSLHT	BLLABBBA
C	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	85.7	L3	10	L3-10-*	-1	LQYYNYpPYT	BBAABABBBB
C	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	83.3	L4	6	L4-6-1	20	GSGTQF	EBEABB
D	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	92.3	H1	13	H1-13-*	-1	VASRFTFSNYGMN	BBAABALBLBBBB
D	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	40.0	H2	10	H2-10-*	-1	YIGSTSShiY
D	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	0.0	H3	13	H3-13-*	-1	VGHVRKLGAFFDY	BBBBBLABABBAB
D	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	87.5	H4	8	H4-8-*	-1	RDNAKNTL	BBABLLBB
E	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	72.7	L1	11	L1-11-*	-1	RAsedihsrLA
E	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	100.0	L2	8	L2-8-*	-1	Ynanslht
E	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	85.7	L3	10	L3-10-*	-1	LQyynyppyt
E	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	83.3	L4	6	L4-6-*	-1	gsgTQF
F	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	92.3	H1	13	H1-13-*	-1	VASrftfSNYGMN
F	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	40.0	H2	10	H2-10-*	-1	YIGSTSshiy
F	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	0.0	H3	13	H3-13-*	-1	VGHVRKLGAFFDY	BBBBABABABBAB
F	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	87.5	H4	8	H4-8-*	-1	RDNAKNTL	BBABLLBB
G	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	72.7	L1	11	L1-11-*	-1	rasedihsrLA
G	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	100.0	L2	8	L2-8-*	-1	YNANSLHt
G	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	85.7	L3	10	L3-10-*	-1	LQYYNYpPYT	BBABLAABBB
G	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	83.3	L4	6	L4-6-1	21	GSGTQF	EBEABB
H	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	92.3	H1	13	H1-13-*	-1	VASRFTFSNYGMN	BBAABALAABBBB
H	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	40.0	H2	10	H2-10-2	15	YIGSTSSHIY	BBBAALABBB
H	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	0.0	H3	13	H3-13-*	-1	VGHVRKLGAFFDY	BBBBBLABABBAB
H	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	87.5	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
I	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	92.3	H1	13	H1-13-*	-1	vasrftfsnygMN
I	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	40.0	H2	10	H2-10-*	-1	yigstsshiy
I	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	0.0	H3	13	H3-13-*	-1	VGHvrklgaFFDY
I	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	87.5	H4	8	H4-8-*	-1	rdnakNTL
J	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	72.7	L1	11	L1-11-2	16	RASEDIHSRLA	BBABBALLBBB
J	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	100.0	L2	8	L2-8-*	-1	YNANSLHT	BLLABBBA
J	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	85.7	L3	10	L3-10-*	-1	LQYYNYpPYT	BBAABABbBB
J	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	83.3	L4	6	L4-6-1	20	GSGTQF	EBEABB
K	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	92.3	H1	13	H1-13-*	-1	VASRFTFSNYGMN	BBAABALAABBBB
K	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	40.0	H2	10	H2-10-*	-1	YIGSTSSHIY	BBBABBABBB
K	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	0.0	H3	13	H3-13-*	-1	VGHVRKLGAFFDY	BBBBABEELBBAB
K	heavy	Homo.sapiens	Ra_IGHV5-54*01	84.9	Ra_IGHV5-54*01	87.5	H4	8	H4-8-*	-1	RDNAKNTL	BBABLLBB
L	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	72.7	L1	11	L1-11-*	-1	RASEDIHSRLA	BBAALBBLBBB
L	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	100.0	L2	8	L2-8-*	-1	YNANSLHT	BLLABBBA
L	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	85.7	L3	10	L3-10-*	-1	LQYYNYpPYT	BBAABAABBB
L	kappa	Homo.sapiens	Ra_IGKV12S34*01	98.6	Ra_IGKV12S34*01	83.3	L4	6	L4-6-1	21	GSGTQF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022