PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7AKD

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Homo.sapiens	Hu_IGHV4-59*11	98.6	Hu_IGHV4-59*11	92.3	H1	13	H1-13-*	-1	SVSGGSISSHYWS	BBBLBBBAABBBB
D	heavy	Homo.sapiens	Hu_IGHV4-59*11	98.6	Hu_IGHV4-59*11	100.0	H2	9	H2-9-1	14	YIYYSGSTN	BBBAALBBB
D	heavy	Homo.sapiens	Hu_IGHV4-59*11	98.6	Hu_IGHV4-59*11	100.0	H3	15	H3-15-*	-1	ARGVLLWfGEPIFEI
D	heavy	Homo.sapiens	Hu_IGHV4-59*11	98.6	Hu_IGHV4-59*11	100.0	H4	8	H4-8-*	-1	VDTSKNQF	BBABLLBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	90.9	L1	11	L1-11-*	-1	RASQSVSSSLA	BBABBBBLABB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	87.5	L2	8	L2-8-*	-1	YGASTRAP	ABBLBBBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	L3	9	L3-9-2	13	QQYNNWPLT	BBAABABBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	L4	6	L4-6-*	-1	GSGTEF	EBAABB
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	98.6	Hu_IGHV4-59*11	92.3	H1	13	H1-13-*	-1	SVSGGSISSHYWS	BBBLBBBAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	98.6	Hu_IGHV4-59*11	100.0	H2	9	H2-9-1	14	YIYYSGSTN	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	98.6	Hu_IGHV4-59*11	100.0	H3	15	H3-15-*	-1	ARGVLLWfGEPIFEI
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	98.6	Hu_IGHV4-59*11	100.0	H4	8	H4-8-*	-1	VDTSKNQF	BBABLLBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	90.9	L1	11	L1-11-*	-1	RASQSVSSSLA	BBABBBBLABB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	87.5	L2	8	L2-8-*	-1	YGASTRAP	ABBLBBBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	L3	9	L3-9-2	13	QQYNNWPLT	BBAABABBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	L4	6	L4-6-*	-1	GSGTEF	EBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022