PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6ZER

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	84.6	H1	13	H1-13-1	12	AASAFTFSSYDMH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	100.0	H2	10	H2-10-2	8	VISYDGSNKY	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	100.0	H3	14	H3-14-*	-1	AKDGGKLWVYYFDY	BBALLABABBBBAB
B	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	100.0	H4	8	H4-8-1	10	RDNSKNTL	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBBAAABB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	20	YAASSLQS	BLEBBBBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	10	L3-10-*	-1	QQSYSTlaLT	BBAABAABBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	19	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	84.6	H1	13	H1-13-1	12	AASAFTFSSYDMH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	100.0	H2	10	H2-10-2	8	VISYDGSNKY	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	100.0	H3	14	H3-14-*	-1	AKDGGKLWVYYFDY	BBALLABABBBBAB
F	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	100.0	H4	8	H4-8-1	10	RDNSKNTL	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBBAAABB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	20	YAASSLQS	BLEBBBBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	10	L3-10-*	-1	QQSYSTlaLT	BBAABAABBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	84.6	H1	13	H1-13-1	12	AASAFTFSSYDMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	100.0	H2	10	H2-10-2	8	VISYDGSNKY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	100.0	H3	14	H3-14-*	-1	AKDGGKLWVYYFDY	BBALLABABBBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	100.0	H4	8	H4-8-1	10	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBBAAABB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	20	YAASSLQS	BLEBBBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	10	L3-10-*	-1	QQSYSTlaLT	BBAABAABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022