PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6Z7W

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L1	11	L1-11-1	6	KASQNVRTAVA	BBABBAEABBB
A	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L2	8	L2-8-1	5	YLASNRHT	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L3	9	L3-9-cis7-1	6	LQHWNYPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L4	6	L4-6-1	17	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	92.3	H1	13	H1-13-1	15	KASGYAFTNHLIE	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	90.0	H2	10	H2-10-1	10	VINPGSGGTK	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	100.0	H3	14	H3-14-*	-1	ARSSEFITTVAADY	BBBBBLBBABBLAB
B	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	100.0	H4	8	H4-8-1	10	ADKSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L1	11	L1-11-1	6	KASQNVRTAVA	BBABBAEABBB
C	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L2	8	L2-8-1	6	YLASNRHT	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L3	9	L3-9-cis7-1	6	LQHWNYPLT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L4	6	L4-6-1	17	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	92.3	H1	13	H1-13-1	15	KASGYAFTNHLIE	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	90.0	H2	10	H2-10-1	8	VINPGSGGTK	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	100.0	H3	14	H3-14-*	-1	ARSSEFITTVAADY	BBBBBLBBABBLAB
D	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L1	11	L1-11-1	6	KASQNVRTAVA	BBABBAEABBB
E	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L2	8	L2-8-1	6	YLASNRHT	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L3	9	L3-9-cis7-1	6	LQHWNYPLT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L4	6	L4-6-1	17	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	92.3	H1	13	H1-13-1	15	KASGYAFTNHLIE	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	90.0	H2	10	H2-10-1	10	VINPGSGGTK	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	100.0	H3	14	H3-14-*	-1	ARSSEFITTVAADY	BBBBBLBBABBLAB
F	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L1	11	L1-11-1	5	KASQNVRTAVA	BBABBAEABBB
G	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L2	8	L2-8-1	5	YLASNRHT	BLLABBBB
G	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L3	9	L3-9-cis7-1	6	LQHWNYPLT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV6-14*01	97.1	Mo_IGKV6-14*01	100.0	L4	6	L4-6-1	16	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	92.3	H1	13	H1-13-1	15	KASGYAFTNHLIE	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	90.0	H2	10	H2-10-1	10	VINPGSGGTK	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	100.0	H3	14	H3-14-*	-1	ARSSEFITTVAADY	BBBBBLBBABBLAB
H	heavy	Mus.musculus	Mo_IGHV1-54*03	97.3	Mo_IGHV1-54*03	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022