PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6Z3K

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H1	15	H1-15-2	10	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
A	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H2	9	H2-9-1	11	SIYYSGSTY	BBBAALBBB
A	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	0.0	H3	12	H3-12-*	-1	AREITMIAWFDP	BBBBBLALBBBb
A	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H4	8	H4-8-1	9	VDTSKNQF	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L1	11	L1-11-1	6	RASQGIRNDLG	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L2	8	L2-8-1	4	YAASSLQS	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	85.7	L3	9	L3-9-1	29	LQDYNYLLT	BBABLLBBB
B	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H1	15	H1-15-2	10	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
C	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H2	9	H2-9-1	11	SIYYSGSTY	BBBAALBBB
C	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	0.0	H3	12	H3-12-*	-1	AREITMIAWFDP	BBBBBLALBBBb
C	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H4	8	H4-8-1	8	VDTSKNQF	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L1	11	L1-11-1	6	RASQGIRNDLG	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L2	8	L2-8-1	5	YAASSLQS	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	85.7	L3	9	L3-9-1	29	LQDYNYLLT	BBABLLBBB
D	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H1	15	H1-15-2	10	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
E	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H2	9	H2-9-1	11	SIYYSGSTY	BBBAALBBB
E	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	0.0	H3	12	H3-12-*	-1	AREITMIAWFDP	BBBBBLALBBBb
E	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H4	8	H4-8-1	8	VDTSKNQF	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L1	11	L1-11-1	7	RASQGIRNDLG	BBABBAEABBB
F	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L2	8	L2-8-1	4	YAASSLQS	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	85.7	L3	9	L3-9-*	-1	LQDYNYLLT	BBABLLBBB
F	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
G	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H1	15	H1-15-2	10	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
G	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H2	9	H2-9-1	10	SIYYSGSTY	BBBAALBBB
G	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	0.0	H3	12	H3-12-*	-1	AREITMIAWFDP	BBBBBLALBBBb
G	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H4	8	H4-8-1	8	VDTSKNQF	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H1	15	H1-15-2	10	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H2	9	H2-9-1	10	SIYYSGSTY	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	0.0	H3	12	H3-12-*	-1	AREITMIAWFDP	BBBBBLALBBBb
H	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H4	8	H4-8-1	9	VDTSKNQF	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L1	11	L1-11-1	7	RASQGIRNDLG	BBABBAEABBB
I	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L2	8	L2-8-1	3	YAASSLQS	BLLABBBB
I	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	85.7	L3	9	L3-9-*	-1	LQDYNYLLT	BBAAALBBB
I	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
J	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H1	15	H1-15-2	10	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
J	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H2	9	H2-9-1	11	SIYYSGSTY	BBBAALBBB
J	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	0.0	H3	12	H3-12-*	-1	AREITMIAWFDP	BBBBBLALBBBb
J	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H4	8	H4-8-1	8	VDTSKNQF	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L1	11	L1-11-1	7	RASQGIRNDLG	BBABBAEABBB
K	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L2	8	L2-8-1	4	YAASSLQS	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	85.7	L3	9	L3-9-1	32	LQDYNYLLT	BBABLLBBB
K	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
L	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L1	11	L1-11-1	6	RASQGIRNDLG	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L2	8	L2-8-1	4	YAASSLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	85.7	L3	9	L3-9-1	29	LQDYNYLLT	BBABLLBBB
L	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H1	15	H1-15-2	10	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
M	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H2	9	H2-9-1	10	SIYYSGSTY	BBBAALBBB
M	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	0.0	H3	12	H3-12-*	-1	AREITMIAWFDP	BBBBBLALBBBb
M	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H4	8	H4-8-1	8	VDTSKNQF	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L1	11	L1-11-1	6	RASQGIRNDLG	BBABBAEABBB
N	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L2	8	L2-8-1	4	YAASSLQS	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	85.7	L3	9	L3-9-*	-1	LQDYNYLLT	BBAAALBBB
N	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H1	15	H1-15-2	10	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
O	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H2	9	H2-9-1	10	SIYYSGSTY	BBBAALBBB
O	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	0.0	H3	12	H3-12-*	-1	AREITMIAWFDP	BBBBBLALBBBb
O	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H4	8	H4-8-1	9	VDTSKNQF	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L1	11	L1-11-1	6	RASQGIRNDLG	BBABBAEABBB
P	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L2	8	L2-8-1	4	YAASSLQS	BLLABBBB
P	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	85.7	L3	9	L3-9-1	29	LQDYNYLLT	BBABLLBBB
P	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
Q	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H1	15	H1-15-2	10	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H2	9	H2-9-1	10	SIYYSGSTY	BBBAALBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	0.0	H3	12	H3-12-*	-1	AREITMIAWFDP	BBBBBLALBBBb
Q	heavy	Homo.sapiens	Hu_IGHV4-39*03	100.0	Hu_IGHV4-39*03	100.0	H4	8	H4-8-1	8	VDTSKNQF	BBAAALBB
R	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L1	11	L1-11-1	5	RASQGIRNDLG	BBABBAEABBB
R	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L2	8	L2-8-1	4	YAASSLQS	BLLABBBB
R	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	85.7	L3	9	L3-9-*	-1	LQDYNYLLT	BBAAALBBB
R	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022