PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6XW5

#CDRs = 4; #Clusters = 4.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	76.9	H1	13	H1-13-5	19	AASGRTFSLTTMG	BBBEBAAABABBB
C	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	CDRLenMismatch	-1.0	H2	9	H2-9-1	11	SISRAAYTY	BBBAALBBB
C	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	50.0	H3	11	H3-11-1	14	AGKGQGGTWDY	BBBBAALBBAB
C	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	87.5	H4	8	H4-8-1	4	RDNAKNMV	BBAAALBB
D	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	76.9	H1	13	H1-13-5	18	AASGRTFSLTTMG	BBBEBAAABABBB
D	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	CDRLenMismatch	-1.0	H2	9	H2-9-1	11	SISRAAYTY	BBBAALBBB
D	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	50.0	H3	11	H3-11-1	15	AGKGQGGTWDY	BBBBAALBBAB
D	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	87.5	H4	8	H4-8-1	7	RDNAKNMV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022