PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6XSW

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Ra_IGHV1-36*01	69.2	H1	13	H1-13-1	7	AASGYAFTDYWMT	BBBLBBAAABBBB
A	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Ra_IGHV1-36*01	80.0	H2	10	H2-10-1	7	EISPNSGGTN	BBBAAALBBB
A	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	100.0	H3	12	H3-12-*	-1	ARGEIRYNWFAY	BBBBBLALBBAB
A	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	87.5	H4	8	H4-8-1	8	VDNAKNSL	BBAAALBB
B	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Ra_IGKV6S5*01	90.9	L1	11	L1-11-1	9	KASQNVGNNIA	BBABBAEABBB
B	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Ra_IGKV6S5*01	87.5	L2	8	L2-8-1	7	YYASNRYT	BLLABBBB
B	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-*	-1	QRLYNSPFT	BBBEBBbBB
B	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	17	GYGTDF	EBEABB
D	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Ra_IGHV1-36*01	69.2	H1	13	H1-13-1	7	AASGYAFTDYWMT	BBBLBBAAABBBB
D	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Ra_IGHV1-36*01	80.0	H2	10	H2-10-1	7	EISPNSGGTN	BBBAAALBBB
D	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	100.0	H3	12	H3-12-*	-1	ARGEIRYNWFAY	BBBBBLALBBAB
D	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	87.5	H4	8	H4-8-1	7	VDNAKNSL	BBAAALBB
E	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Ra_IGKV6S5*01	90.9	L1	11	L1-11-1	9	KASQNVGNNIA	BBABBAEABBB
E	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Ra_IGKV6S5*01	87.5	L2	8	L2-8-1	8	YYASNRYT	BLLABBBB
E	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-*	-1	QRLYNSPFT	BBBEBBbBB
E	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	16	GYGTDF	EBEABB
G	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Ra_IGHV1-36*01	69.2	H1	13	H1-13-1	7	AASGYAFTDYWMT	BBBLBBAAABBBB
G	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Ra_IGHV1-36*01	80.0	H2	10	H2-10-1	7	EISPNSGGTN	BBBAAALBBB
G	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	100.0	H3	12	H3-12-*	-1	ARGEIRYNWFAY	BBBBEAALBBAB
G	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	87.5	H4	8	H4-8-1	7	VDNAKNSL	BBAAALBB
H	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Ra_IGHV1-36*01	69.2	H1	13	H1-13-1	6	AASGYAFTDYWMT	BBBLBBAAABBBB
H	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Ra_IGHV1-36*01	80.0	H2	10	H2-10-1	7	EISPNSGGTN	BBBAAALBBB
H	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	100.0	H3	12	H3-12-*	-1	ARGEIRYNWFAY	BBBBBLALBBAB
H	heavy	Rattus.norvegicus	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	87.5	H4	8	H4-8-1	8	VDNAKNSL	BBAAALBB
I	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Ra_IGKV6S5*01	90.9	L1	11	L1-11-1	11	KASQNVGNNIA	BBABBAEABBB
I	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Ra_IGKV6S5*01	87.5	L2	8	L2-8-1	7	YYASNRYT	BLLABBBB
I	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-*	-1	QRLYNSPFT	BBBEBBbBB
I	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	16	GYGTDF	EBEABB
L	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Ra_IGKV6S5*01	90.9	L1	11	L1-11-1	9	KASQNVGNNIA	BBABBAEABBB
L	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Ra_IGKV6S5*01	87.5	L2	8	L2-8-1	7	YYASNRYT	BLLABBBB
L	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-*	-1	QRLYNSPFT	BBBEBBbBB
L	kappa	Rattus.norvegicus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	16	GYGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022