PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6XQ4

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	88.2	L1	17	L1-17-*	-1	KSSQSLlyssrnKNYLA	BBABBABBAABBBBBBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	15	YWASTRES	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	85.7	L3	9	L3-9-cis7-1	16	QQYYSIPLT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	17	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	92.3	H1	13	H1-13-1	15	AASGFTVSRNYMS	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	66.7	H2	9	H2-9-*	-1	IIYSGDDTY	BBBEALBBB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	100.0	H3	16	H3-16-*	-1	ARGEMGDGYYWapFDY
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	100.0	H4	8	H4-8-1	9	RDNSKNTL	BBAAALBB
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	92.3	H1	13	H1-13-1	19	AASGFTVSRNYMS	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	66.7	H2	9	H2-9-*	-1	IIYSGDDTY	BBBEBLBBB
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	100.0	H3	16	H3-16-*	-1	ARGEMGDGYYWapFDY
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	98.6	Hu_IGHV3-66*01	100.0	H4	8	H4-8-1	9	RDNSKNTL	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	88.2	L1	17	L1-17-*	-1	KSSQSLlyssrnKNYLA	BBABBABBAABBBBBBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L2	8	L2-8-*	-1	YWASTRES	BLLABBAE
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	85.7	L3	9	L3-9-cis7-1	12	QQYYSIPLT	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022