PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6XQ2

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	kappa	Homo.sapiens	Hu_IGKV1D-13*01	94.1	Hu_IGKV1D-13*01	72.7	L1	11	L1-11-*	-1	RTSQGISTPLA	BBABBBABBBB
B	kappa	Homo.sapiens	Hu_IGKV1D-13*01	94.1	Hu_IGKV1D-13*01	75.0	L2	8	L2-8-*	-1	HDAFSLES	BBEAAAAB
B	kappa	Homo.sapiens	Hu_IGKV1D-13*01	94.1	Hu_IGKV1D-13*01	71.4	L3	9	L3-9-cis7-1	8	QQFYDYPIT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1D-13*01	94.1	Hu_IGKV1D-13*01	100.0	L4	6	L4-6-1	19	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-48*03	98.6	Hu_IGHV3-48*03	84.6	H1	13	H1-13-1	15	EASGFTFSNYEMN	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-48*03	98.6	Hu_IGHV3-48*03	50.0	H2	10	H2-10-*	-1	YIRSSGTVTS	BBBAAELBBB
C	heavy	Homo.sapiens	Hu_IGHV3-48*03	98.6	Hu_IGHV3-48*03	100.0	H3	15	H3-15-*	-1	ARDLVYTgSYYGMDV
C	heavy	Homo.sapiens	Hu_IGHV3-48*03	98.6	Hu_IGHV3-48*03	100.0	H4	8	H4-8-1	7	RDNAKNSL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1D-13*01	94.1	Hu_IGKV1D-13*01	72.7	L1	11	L1-11-*	-1	RTSQGISTPLA	BBABBBABBBB
E	kappa	Homo.sapiens	Hu_IGKV1D-13*01	94.1	Hu_IGKV1D-13*01	75.0	L2	8	L2-8-*	-1	HDAFSLES	LBBEBAAB
E	kappa	Homo.sapiens	Hu_IGKV1D-13*01	94.1	Hu_IGKV1D-13*01	71.4	L3	9	L3-9-cis7-1	9	QQFYDYPIT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV1D-13*01	94.1	Hu_IGKV1D-13*01	100.0	L4	6	L4-6-1	15	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-48*03	98.6	Hu_IGHV3-48*03	84.6	H1	13	H1-13-1	17	EASGFTFSNYEMN	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-48*03	98.6	Hu_IGHV3-48*03	50.0	H2	10	H2-10-*	-1	YIRSSGTVTS	EBBAAELBBB
F	heavy	Homo.sapiens	Hu_IGHV3-48*03	98.6	Hu_IGHV3-48*03	100.0	H3	15	H3-15-*	-1	ARDLVYTgSYYGMDV
F	heavy	Homo.sapiens	Hu_IGHV3-48*03	98.6	Hu_IGHV3-48*03	100.0	H4	8	H4-8-1	15	RDNAKNSL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022