PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6XQ0

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Homo.sapiens	Hu_IGHV3-13*01	89.0	Hu_IGHV3-13*01	76.9	H1	13	H1-13-1	9	AGSGFMFRSYDMH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-13*01	89.0	Hu_IGHV3-13*01	33.3	H2	9	H2-9-1	12	GMGKGGETF	BBBAALBBB
B	heavy	Homo.sapiens	Hu_IGHV3-13*01	89.0	Hu_IGHV3-13*01	100.0	H3	23	H3-23-*	-1	ARAltewlfqrgTRNHYYYGMDV
B	heavy	Homo.sapiens	Hu_IGHV3-13*01	89.0	Hu_IGHV3-13*01	87.5	H4	8	H4-8-1	4	RENARNSL	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	58.3	L1	12	L1-12-1	7	RASQIIDnKYLA	BBABBBBAAABB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	8	YGASNRAT	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	71.4	L3	9	L3-9-1	13	QQFGSSVYT	BBBBLLBBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	83.3	L4	6	L4-6-1	8	GSGTEF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-13*01	89.0	Hu_IGHV3-13*01	76.9	H1	13	H1-13-1	8	AGSGFMFRSYDMH	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-13*01	89.0	Hu_IGHV3-13*01	33.3	H2	9	H2-9-1	8	GMGKGGETF	BBBAALBBB
E	heavy	Homo.sapiens	Hu_IGHV3-13*01	89.0	Hu_IGHV3-13*01	100.0	H3	23	H3-23-*	-1	ARAltewlfqrgTRNHYYYGMDV
E	heavy	Homo.sapiens	Hu_IGHV3-13*01	89.0	Hu_IGHV3-13*01	87.5	H4	8	H4-8-1	6	RENARNSL	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	58.3	L1	12	L1-12-1	11	RASQIIDnKYLA	BBABBBBAAABB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	6	YGASNRAT	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	71.4	L3	9	L3-9-1	10	QQFGSSVYT	BBBBLLBBB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.7	Hu_IGKV3-20*01	83.3	L4	6	L4-6-1	5	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022