PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6XPZ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Homo.sapiens	Hu_IGHV3-30*18	90.4	Hu_IGHV3-30*18	61.5	H1	13	H1-13-1	18	AGSGFSFSNFGMN	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-30*18	90.4	Hu_IGHV3-30*18	70.0	H2	10	H2-10-2	12	IISYDGSKKW	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-30*18	90.4	Hu_IGHV3-30*18	50.0	H3	25	H3-25-*	-1	SKDRgdvwsgyyrggDYHYYFGMDV
B	heavy	Homo.sapiens	Hu_IGHV3-30*18	90.4	Hu_IGHV3-30*18	75.0	H4	8	H4-8-1	6	RDDAKNTL	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	6	QASQDISNFLN	BBABBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	62.5	L2	8	L2-8-1	13	YDASYLQG	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	71.4	L3	9	L3-9-cis7-1	13	QQYNSlPIT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-30*18	90.4	Hu_IGHV3-30*18	61.5	H1	13	H1-13-1	16	AGSGFSFSNFGMN	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-30*18	90.4	Hu_IGHV3-30*18	70.0	H2	10	H2-10-2	13	IISYDGSKKW	BBBAALABBB
E	heavy	Homo.sapiens	Hu_IGHV3-30*18	90.4	Hu_IGHV3-30*18	50.0	H3	25	H3-25-*	-1	SKDRgdvwsgyyrggDYHYYFGMDV
E	heavy	Homo.sapiens	Hu_IGHV3-30*18	90.4	Hu_IGHV3-30*18	75.0	H4	8	H4-8-1	8	RDDAKNTL	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	7	QASQDISNFLN	BBABBAEABBB
F	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	62.5	L2	8	L2-8-1	11	YDASYLQG	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	71.4	L3	9	L3-9-cis7-1	12	QQYNSlPIT	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022