PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6XPR

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Homo.sapiens	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	84.6	H1	13	H1-13-1	16	AASGFTFSSAWMT	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	90.0	H2	10	H2-10-2	11	NIKEDGSEKY	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	100.0	H3	20	H3-20-*	-1	ARRfverlwGQSKPYDAVDI
B	heavy	Homo.sapiens	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	100.0	H4	8	H4-8-*	-1	RDNAKNSL	BBAABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	90.9	L1	11	L1-11-*	-1	RASQSISNYLN	BBABBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	22	YVASNLQS	BLEABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	71.4	L3	9	L3-9-*	-1	QQSYSPVTT	BBBBAALAB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	84.6	H1	13	H1-13-1	18	AASGFTFSSAWMT	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	90.0	H2	10	H2-10-2	12	NIKEDGSEKY	BBBAALABBB
E	heavy	Homo.sapiens	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	100.0	H3	20	H3-20-*	-1	ARRfverlwGQSKPYDAVDI
E	heavy	Homo.sapiens	Hu_IGHV3-7*01	91.8	Hu_IGHV3-7*01	100.0	H4	8	H4-8-*	-1	RDNAKNSL	BBAABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	29	RASQSISNYLN	BBABBAEABBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	75.0	L2	8	L2-8-*	-1	YVASNLQS	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	71.4	L3	9	L3-9-*	-1	QQSYSPVTT	BBBBAALAB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022