PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6XMI

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	72.7	L1	11	L1-11-1	8	RASQSVSSAVA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	62.5	L2	8	L2-8-1	4	YSASSLYS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	57.1	L3	11	L3-11-*	-1	QQSVSYmgPLT	BBAABBLBBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	10	RSGTDF	BBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV1-66*01	61.5	H1	13	H1-13-1	18	AASGFNFYSSYIH	BBBLBBAABBBBB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV1-66*01	50.0	H2	10	H2-10-1	9	SISPYSGSTS	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	23	H3-23-*	-1	ARYSWPWVSYkpyyglhfsAMDY
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-1	5	ADTSKNTA	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	72.7	L1	11	L1-11-1	7	RASQSVSSAVA	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	62.5	L2	8	L2-8-1	4	YSASSLYS	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	57.1	L3	11	L3-11-*	-1	QQSVSYmgPLT	BBAABBLBBBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	11	RSGTDF	BBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV1-66*01	61.5	H1	13	H1-13-1	17	AASGFNFYSSYIH	BBBLBBAABBBBB
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV1-66*01	50.0	H2	10	H2-10-1	10	SISPYSGSTS	BBBAAALBBB
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	23	H3-23-*	-1	ARYSWPWVSYkpyyglhfsAMDY
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-1	5	ADTSKNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022