PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6XM2

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Rb_IGKV1S12*01	92.3	L1	13	L1-13-3	5	QSSQSVynNNYLS	BBABBBBLLABBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Rb_IGKV1S12*01	87.5	L2	8	L2-8-1	6	YGASTLTS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Hu_IGKV3-20*01	14.3	L3	12	L3-12-*	-1	AGGysgSSDKYA
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	15	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Rb_IGHV1S13*01	76.9	H1	13	H1-13-1	11	TVTGFSLSSYTVN	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Rb_IGHV1S13*01	77.8	H2	9	H2-9-1	12	YISYGGSAY	BBBAALBBB
B	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Hu_IGHV4-OR15-8*02	100.0	H3	19	H3-19-*	-1	ARHMQvggapTGSMAAFDP
B	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Hu_IGHV4-OR15-8*02	62.5	H4	8	H4-8-1	9	KDSSKNQV	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Rb_IGKV1S12*01	92.3	L1	13	L1-13-3	6	QSSQSVynNNYLS	BBABBBBLLABBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Rb_IGKV1S12*01	87.5	L2	8	L2-8-1	8	YGASTLTS	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Hu_IGKV3-20*01	14.3	L3	12	L3-12-*	-1	AGGysgSSDKYA
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Rb_IGHV1S13*01	76.9	H1	13	H1-13-1	12	TVTGFSLSSYTVN	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Rb_IGHV1S13*01	77.8	H2	9	H2-9-1	13	YISYGGSAY	BBBAALBBB
D	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Hu_IGHV4-OR15-8*02	100.0	H3	19	H3-19-*	-1	ARHMQvggapTGSMAAFDP
D	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Hu_IGHV4-OR15-8*02	62.5	H4	8	H4-8-1	11	KDSSKNQV	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Rb_IGKV1S12*01	92.3	L1	13	L1-13-3	5	QSSQSVynNNYLS	BBABBBBLLABBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Rb_IGKV1S12*01	87.5	L2	8	L2-8-1	4	YGASTLTS	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Hu_IGKV3-20*01	14.3	L3	12	L3-12-*	-1	AGGysgSSDKYA
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Rb_IGHV1S13*01	76.9	H1	13	H1-13-1	12	TVTGFSLSSYTVN	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Rb_IGHV1S13*01	77.8	H2	9	H2-9-1	12	YISYGGSAY	BBBAALBBB
F	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Hu_IGHV4-OR15-8*02	100.0	H3	19	H3-19-*	-1	ARHMQvggapTGSMAAFDP
F	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Hu_IGHV4-OR15-8*02	62.5	H4	8	H4-8-1	7	KDSSKNQV	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Rb_IGKV1S12*01	92.3	L1	13	L1-13-3	5	QSSQSVynNNYLS	BBABBBBLLABBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Rb_IGKV1S12*01	87.5	L2	8	L2-8-1	5	YGASTLTS	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Hu_IGKV3-20*01	14.3	L3	12	L3-12-*	-1	AGGysgSSDKYA
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	95.5	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Rb_IGHV1S13*01	76.9	H1	13	H1-13-1	12	TVTGFSLSSYTVN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Rb_IGHV1S13*01	77.8	H2	9	H2-9-1	13	YISYGGSAY	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Hu_IGHV4-OR15-8*02	100.0	H3	19	H3-19-*	-1	ARHMQvggapTGSMAAFDP
H	heavy	Homo.sapiens	Hu_IGHV4-OR15-8*02	83.1	Hu_IGHV4-OR15-8*02	62.5	H4	8	H4-8-1	7	KDSSKNQV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022