PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6XCM

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	100.0	H1	13	H1-13-*	-1	AASGFTVSSNYMS	BAAABBABLBBBB
H	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	100.0	H2	9	H2-9-1	13	VIYSGGSTY	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	100.0	H3	12	H3-12-*	-1	ARGEGWELPYDY	BBEBEABLBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	100.0	H4	8	H4-8-*	-1	RDNSKNTL	BBABAABB
L	lambda	Homo.sapiens	Hu_IGLV2-8*01	100.0	Hu_IGLV2-8*01	92.9	L1	14	L1-14-*	-1	TGTSSDVGgYKYVS	BBBAAAAAABABBB
L	lambda	Homo.sapiens	Hu_IGLV2-8*01	100.0	Hu_IGLV2-8*01	100.0	L2	8	L2-8-*	-1	YEVSKRPS	BLAABBBA
L	lambda	Homo.sapiens	Hu_IGLV2-8*01	100.0	Hu_IGLV2-8*01	88.9	L3	11	L3-11-*	-1	SSYEGSNNFVV	BBBBABLLBBB
L	lambda	Homo.sapiens	Hu_IGLV2-8*01	100.0	Hu_IGLV2-8*01	100.0	L4	6	L4-6-2	25	KSGNTA	BBEABB
N	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	100.0	H1	13	H1-13-*	-1	AASGFTVSSNYMS	BBAABBAAABBBB
N	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	100.0	H2	9	H2-9-1	18	VIYSGGSTY	BBBAALBBB
N	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	100.0	H3	12	H3-12-*	-1	ARGEGWELPYDY	BBEBAABLBBAB
N	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	100.0	H4	8	H4-8-1	18	RDNSKNTL	BBAAALBB
S	lambda	Homo.sapiens	Hu_IGLV2-8*01	100.0	Hu_IGLV2-8*01	92.9	L1	14	L1-14-*	-1	TGTSSDVGgYKYVS	BBBAAAAAABBBBB
S	lambda	Homo.sapiens	Hu_IGLV2-8*01	100.0	Hu_IGLV2-8*01	100.0	L2	8	L2-8-*	-1	YEVSKRPS	BLAABBBA
S	lambda	Homo.sapiens	Hu_IGLV2-8*01	100.0	Hu_IGLV2-8*01	88.9	L3	11	L3-11-*	-1	SSYEGSNNFVV	BBBALBLLBBB
S	lambda	Homo.sapiens	Hu_IGLV2-8*01	100.0	Hu_IGLV2-8*01	100.0	L4	6	L4-6-2	26	KSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022