PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6X96

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	94.2	Rb_IGHV1S40*01	92.9	H1	14	H1-14-*	-1	TASGFSFSsDYYMC	BBBLBBBBABBBBB
E	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	94.2	CDRLenMismatch	-1.0	H2	10	H2-10-6	16	CIWTANSISY	BBBABLLBBB
E	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	94.2	Rb_IGHV1S40*01	100.0	H3	11	H3-11-*	-1	ARGGSGDGQSL	BBBBBLBBBAB
E	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	94.2	Rb_IGHV1S40*01	100.0	H4	7	H4-7-1	9	KTSSTTV	BABAABB
F	kappa	Oryctolagus.cuniculus	Rb_IGKV1S4*01	92.6	Rb_IGKV1S4*01	72.7	L1	11	L1-11-*	-1	QASQSIRSYLA	BBABBABLABB
F	kappa	Oryctolagus.cuniculus	Rb_IGKV1S4*01	92.6	Rb_IGKV1S4*01	100.0	L2	8	L2-8-1	6	YEASKLAS	BLEABBBB
F	kappa	Oryctolagus.cuniculus	Rb_IGKV1S4*01	92.6	Rb_IGKV1S4*01	20.0	L3	15	L3-15-*	-1	QRNYDsysgayYPNG
F	kappa	Oryctolagus.cuniculus	Rb_IGKV1S4*01	92.6	Rb_IGKV1S4*01	100.0	L4	6	L4-6-1	15	GSGTQF	EBEABB
H	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	94.2	Rb_IGHV1S40*01	92.9	H1	14	H1-14-*	-1	TASGFSFSsDYYMC	BBBLBBBBABBBBB
H	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	94.2	CDRLenMismatch	-1.0	H2	10	H2-10-6	16	CIWTANSISY	BBBABLLBBB
H	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	94.2	Rb_IGHV1S40*01	100.0	H3	11	H3-11-*	-1	ARGGSGDGQSL	BBBBBLBBBAB
H	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	94.2	Rb_IGHV1S40*01	100.0	H4	7	H4-7-1	9	KTSSTTV	BABAABB
J	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	94.2	Rb_IGHV1S40*01	92.9	H1	14	H1-14-*	-1	TASGFSFSsDYYMC	BBBLBBBBABBBBB
J	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	94.2	CDRLenMismatch	-1.0	H2	10	H2-10-6	16	CIWTANSISY	BBBABLLBBB
J	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	94.2	Rb_IGHV1S40*01	100.0	H3	11	H3-11-*	-1	ARGGSGDGQSL	BBBBBLBBBAB
J	heavy	Oryctolagus.cuniculus	Rb_IGHV1S40*01	94.2	Rb_IGHV1S40*01	100.0	H4	7	H4-7-1	9	KTSSTTV	BABAABB
K	kappa	Oryctolagus.cuniculus	Rb_IGKV1S4*01	92.6	Rb_IGKV1S4*01	72.7	L1	11	L1-11-*	-1	QASQSIRSYLA	BBABBABLABB
K	kappa	Oryctolagus.cuniculus	Rb_IGKV1S4*01	92.6	Rb_IGKV1S4*01	100.0	L2	8	L2-8-1	6	YEASKLAS	BLEABBBB
K	kappa	Oryctolagus.cuniculus	Rb_IGKV1S4*01	92.6	Rb_IGKV1S4*01	20.0	L3	15	L3-15-*	-1	QRNYDsysgayYPNG
K	kappa	Oryctolagus.cuniculus	Rb_IGKV1S4*01	92.6	Rb_IGKV1S4*01	100.0	L4	6	L4-6-1	15	GSGTQF	EBEABB
L	kappa	Oryctolagus.cuniculus	Rb_IGKV1S4*01	92.6	Rb_IGKV1S4*01	72.7	L1	11	L1-11-*	-1	QASQSIRSYLA	BBABBABLABB
L	kappa	Oryctolagus.cuniculus	Rb_IGKV1S4*01	92.6	Rb_IGKV1S4*01	100.0	L2	8	L2-8-1	6	YEASKLAS	BLEABBBB
L	kappa	Oryctolagus.cuniculus	Rb_IGKV1S4*01	92.6	Rb_IGKV1S4*01	20.0	L3	15	L3-15-*	-1	QRNYDsysgayYPNG
L	kappa	Oryctolagus.cuniculus	Rb_IGKV1S4*01	92.6	Rb_IGKV1S4*01	100.0	L4	6	L4-6-1	15	GSGTQF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022