PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6X3S

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
I	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	90.9	L1	11	L1-11-*	-1	KASEYVGTYVS	BBABBBBLABB
I	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L2	8	L2-8-4	28	YGASNRYT	BEABBBBB
I	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L3	8	L3-8-3	8	GQSYSYPT	BBAABBBB
I	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L4	6	L4-6-*	-1	GSATDF	BBAABB
J	heavy	Mus.musculus	Mo_IGHV14-3*02	97.3	Mo_IGHV14-3*02	92.3	H1	13	H1-13-1	16	TASGFNIKDTYMY	BBBLBBAAABBBB
J	heavy	Mus.musculus	Mo_IGHV14-3*02	97.3	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	14	RIDPANGDTK	BBBAAALBBB
J	heavy	Mus.musculus	Mo_IGHV14-3*02	97.3	Mo_IGHV14-3*02	100.0	H3	11	H3-11-*	-1	ARKGLRWAMDY	BBBELLLALAB
J	heavy	Mus.musculus	Mo_IGHV14-3*02	97.3	Mo_IGHV14-3*02	75.0	H4	8	H4-8-1	11	TDTFSNTA	BBAAALBB
K	heavy	Mus.musculus	Mo_IGHV14-3*02	97.3	Mo_IGHV14-3*02	92.3	H1	13	H1-13-1	17	TASGFNIKDTYMY	BBBLBBAAABBBB
K	heavy	Mus.musculus	Mo_IGHV14-3*02	97.3	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	16	RIDPANGDTK	BBBAAALBBB
K	heavy	Mus.musculus	Mo_IGHV14-3*02	97.3	Mo_IGHV14-3*02	100.0	H3	11	H3-11-1	24	ARKGLRWAMDY	BBBBABLBBAB
K	heavy	Mus.musculus	Mo_IGHV14-3*02	97.3	Mo_IGHV14-3*02	75.0	H4	8	H4-8-1	9	TDTFSNTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	90.9	L1	11	L1-11-*	-1	KASEYVGTYVS	BBABBBAAABB
L	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L2	8	L2-8-*	-1	YGASNRYT	BEBLBBBB
L	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L3	8	L3-8-3	7	GQSYSYPT	BBAABBBB
L	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L4	6	L4-6-*	-1	GSATDF	BBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022