PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6X1T

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	69.2	H1	13	H1-13-4	14	TASGFSLNGYGVI	BBBLBBABLBBBB
A	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	33.3	H2	9	H2-9-1	18	SAGAYGRIY	BBBAALBBB
A	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	100.0	H3	14	H3-14-*	-1	ARRTNVSTSVGFDS	BBBABAAAEABBAB
A	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	87.5	H4	8	H4-8-1	14	RNTNLNTV	BBAAALBB
B	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	76.9	L1	13	L1-13-3	7	QASESVysNNRLS	BBABBBBLLABBB
B	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	75.0	L2	8	L2-8-1	4	YLVSTLAS	BLLABBBB
B	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	20.0	L3	12	L3-12-*	-1	VGYKSSTtdgLA
B	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	100.0	L4	6	L4-6-1	11	GSGTQF	EBEABB
C	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	69.2	H1	13	H1-13-4	14	TASGFSLNGYGVI	BBBLBBABLBBBB
C	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	33.3	H2	9	H2-9-1	17	SAGAYGRIY	BBBAALBBB
C	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	100.0	H3	14	H3-14-*	-1	ARRTNVSTSVGFDS	BBBABAAAEABBAB
C	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	87.5	H4	8	H4-8-1	14	RNTNLNTV	BBAAALBB
D	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	76.9	L1	13	L1-13-3	6	QASESVysNNRLS	BBABBBBLLABBB
D	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	75.0	L2	8	L2-8-1	4	YLVSTLAS	BLLABBBB
D	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	20.0	L3	12	L3-12-*	-1	VGYKSSTtdgLA
D	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	100.0	L4	6	L4-6-1	11	GSGTQF	EBEABB
E	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	69.2	H1	13	H1-13-4	15	TASGFSLNGYGVI	BBBLBBABLBBBB
E	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	33.3	H2	9	H2-9-1	17	SAGAYGRIY	BBBAALBBB
E	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	100.0	H3	14	H3-14-*	-1	ARRTNVSTSVGFDS	BBBABAAAEABBAB
E	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	87.5	H4	8	H4-8-1	14	RNTNLNTV	BBAAALBB
F	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	76.9	L1	13	L1-13-3	7	QASESVysNNRLS	BBABBBBLLABBB
F	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	75.0	L2	8	L2-8-1	4	YLVSTLAS	BLLABBBB
F	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	20.0	L3	12	L3-12-*	-1	VGYKSSTtdgLA
F	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	100.0	L4	6	L4-6-1	11	GSGTQF	EBEABB
G	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	69.2	H1	13	H1-13-4	14	TASGFSLNGYGVI	BBBLBBABLBBBB
G	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	33.3	H2	9	H2-9-1	17	SAGAYGRIY	BBBAALBBB
G	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	100.0	H3	14	H3-14-*	-1	ARRTNVSTSVGFDS	BBBABAAAEABBAB
G	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	87.5	H4	8	H4-8-1	14	RNTNLNTV	BBAAALBB
H	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	69.2	H1	13	H1-13-4	14	TASGFSLNGYGVI	BBBLBBABLBBBB
H	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	33.3	H2	9	H2-9-1	18	SAGAYGRIY	BBBAALBBB
H	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	100.0	H3	14	H3-14-*	-1	ARRTNVSTSVGFDS	BBBABAAAEABBAB
H	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	87.5	H4	8	H4-8-1	14	RNTNLNTV	BBAAALBB
I	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	76.9	L1	13	L1-13-3	6	QASESVysNNRLS	BBABBBBLLABBB
I	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	75.0	L2	8	L2-8-1	4	YLVSTLAS	BLLABBBB
I	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	20.0	L3	12	L3-12-*	-1	VGYKSSTtdgLA
I	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	100.0	L4	6	L4-6-1	11	GSGTQF	EBEABB
J	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	69.2	H1	13	H1-13-4	14	TASGFSLNGYGVI	BBBLBBABLBBBB
J	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	33.3	H2	9	H2-9-1	17	SAGAYGRIY	BBBAALBBB
J	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	100.0	H3	14	H3-14-*	-1	ARRTNVSTSVGFDS	BBBABAAAEABBAB
J	heavy	Oryctolagus.cuniculus	Rb_IGHV1S57*01	88.6	Rb_IGHV1S57*01	87.5	H4	8	H4-8-1	14	RNTNLNTV	BBAAALBB
K	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	76.9	L1	13	L1-13-3	6	QASESVysNNRLS	BBABBBBLLABBB
K	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	75.0	L2	8	L2-8-1	5	YLVSTLAS	BLLABBBB
K	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	20.0	L3	12	L3-12-*	-1	VGYKSSTtdgLA
K	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	100.0	L4	6	L4-6-1	11	GSGTQF	EBEABB
L	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	76.9	L1	13	L1-13-3	7	QASESVysNNRLS	BBABBBBLLABBB
L	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	75.0	L2	8	L2-8-1	5	YLVSTLAS	BLLABBBB
L	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	20.0	L3	12	L3-12-*	-1	VGYKSSTtdgLA
L	kappa	Oryctolagus.cuniculus	Rb_IGKV1S15*01	90.8	Rb_IGKV1S15*01	100.0	L4	6	L4-6-1	11	GSGTQF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022