PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6WGK

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	7	AGSGFTFRDYAMT	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	80.0	H2	10	H2-10-2	8	SISGSGGNTY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H3	18	H3-18-*	-1	AKDRLSItirpRYYGLDV
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	87.5	L1	16	L1-16-*	-1	RSSQSLlysigYNYLD	BBABBABABBLBBBBB
B	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	100.0	L2	8	L2-8-1	6	YLGSNRAS	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	100.0	L3	9	L3-9-cis7-1	6	MQALQTPYT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	7	AGSGFTFRDYAMT	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	80.0	H2	10	H2-10-2	7	SISGSGGNTY	BBBAALABBB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H3	18	H3-18-*	-1	AKDRLSItirpRYYGLDV
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	87.5	L1	16	L1-16-*	-1	RSSQSLlysigYNYLD	BBABBABABBLBBBBB
D	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	100.0	L2	8	L2-8-1	6	YLGSNRAS	BLEABBBB
D	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	100.0	L3	9	L3-9-cis7-1	7	MQALQTPYT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	9	AGSGFTFRDYAMT	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	80.0	H2	10	H2-10-2	8	SISGSGGNTY	BBBAALABBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H3	18	H3-18-*	-1	AKDRLSItirpRYYGLDV
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	87.5	L1	16	L1-16-*	-1	RSSQSLlysigYNYLD	BBABBABABBLBBBBB
F	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	100.0	L2	8	L2-8-1	5	YLGSNRAS	BLEABBBB
F	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	100.0	L3	9	L3-9-cis7-1	6	MQALQTPYT	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	3	GSGTDF	EBEABB
G	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	8	AGSGFTFRDYAMT	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	80.0	H2	10	H2-10-2	8	SISGSGGNTY	BBBAALABBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H3	18	H3-18-*	-1	AKDRLSItirpRYYGLDV
G	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
H	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	87.5	L1	16	L1-16-*	-1	RSSQSLlysigYNYLD	BBABBABABBLBBBBB
H	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	100.0	L2	8	L2-8-1	5	YLGSNRAS	BLEABBBB
H	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	100.0	L3	9	L3-9-cis7-1	5	MQALQTPYT	BBAABBbBB
H	kappa	Homo.sapiens	Hu_IGKV2-28*01	97.1	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022