PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6VYV

#CDRs = 8; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
I	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	92.3	H1	13	H1-13-*	-1	KASGYTFTEYPML	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	80.0	H2	10	H2-10-1	27	LIYTNTGEPT	BBBAAALBBB
I	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	100.0	H3	10	H3-10-*	-1	VRDYFISLDY	BBBBLABBAB
I	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	87.5	H4	8	H4-8-1	26	LEISASTA	BBAAALBB
J	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	92.3	H1	13	H1-13-*	-1	KASGYTFTEYPML	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	80.0	H2	10	H2-10-1	28	LIYTNTGEPT	BBBAAALBBB
J	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	100.0	H3	10	H3-10-*	-1	VRDYFISLDY	BBBBLABBAB
J	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	87.5	H4	8	H4-8-1	26	LEISASTA	BBAAALBB
K	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	92.3	H1	13	H1-13-*	-1	KASGYTFTEYPML	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	80.0	H2	10	H2-10-*	-1	LIYTNTGEPT	BBBAAALBBB
K	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	100.0	H3	10	H3-10-*	-1	VRDYFISLDY	BBBBLABBAB
K	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	87.5	H4	8	H4-8-1	24	LEISASTA	BBAAALBB
L	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	92.3	H1	13	H1-13-*	-1	KASGYTFTEYPML	BBBLBBAAABBBB
L	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	80.0	H2	10	H2-10-1	23	LIYTNTGEPT	BBBAAALBBB
L	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	100.0	H3	10	H3-10-*	-1	VRDYFISLDY	BBBBLABBAB
L	heavy	Homo.sapiens	Mo_IGHV9-1*01	90.4	Mo_IGHV9-1*01	87.5	H4	8	H4-8-*	-1	LEISASTA	BBAAALBB
M	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	71.4	L1	14	L1-14-*	-1	RSNIGAVTsSNCAN	BBAAEBBBAAALBB
M	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	62.5	L2	8	L2-8-*	-1	GDTNNRRS	BLLABBBB
M	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	62.5	L3	9	L3-9-*	-1	ALWYNNLWV	BBBALAEBB
M	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	15	LIGDKA	BBEABB
N	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	71.4	L1	14	L1-14-*	-1	RSNIGAVTsSNCAN	BBAAEBBBAAALBB
N	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	62.5	L2	8	L2-8-*	-1	GDTNNRRS	BLLABBBB
N	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	62.5	L3	9	L3-9-*	-1	ALWYNNLWV	BBBALABBB
N	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	29	LIGDKA	BBEBBB
O	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	71.4	L1	14	L1-14-1	20	RSNIGAVTsSNCAN	BBAAEBBBAAALBB
O	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	62.5	L2	8	L2-8-*	-1	GDTNNRRS	BLLABBBB
O	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	62.5	L3	9	L3-9-*	-1	ALWYNNLWV	BBBBLABBB
O	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-*	-1	LIGDKA	BBEABB
P	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	71.4	L1	14	L1-14-1	22	RSNIGAVTsSNCAN	BBAAEBBBAAALBB
P	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	62.5	L2	8	L2-8-1	25	GDTNNRRS	BLLABBBB
P	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	62.5	L3	9	L3-9-*	-1	ALWYNNLWV	BBBBLABBB
P	lambda	Homo.sapiens	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	33	LIGDKA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022