PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6VUN

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-33*03	89.0	CDRLenMismatch	-1.0	H1	15	H1-15-*	-1	AASGFSLSTSgiGVT	BBBLBBBBBLLBLBB
A	heavy	Homo.sapiens	Hu_IGHV3-33*03	89.0	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	TIWWDDDNR	BBBBLLBBB
A	heavy	Homo.sapiens	Hu_IGHV3-33*03	89.0	Hu_IGHV3-33*03	50.0	H3	15	H3-15-*	-1	AQSAITSvTDSAMDH
A	heavy	Homo.sapiens	Hu_IGHV3-33*03	89.0	Hu_IGHV3-33*03	62.5	H4	8	H4-8-1	7	ADTSKNTA	BBAAALBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	6	RASQDISSYLN	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	5	YYTSSLHS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	7	QQYSKFPWT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	10	RSGTDF	BBEABB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	7	RASQDISSYLN	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	5	YYTSSLHS	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	7	QQYSKFPWT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	9	RSGTDF	BBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-33*03	89.0	CDRLenMismatch	-1.0	H1	15	H1-15-1	9	AASGFSLSTSgiGVT	BBBLBBAABBLBBBB
B	heavy	Homo.sapiens	Hu_IGHV3-33*03	89.0	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	TIWWDDDNR	BBBABABBB
B	heavy	Homo.sapiens	Hu_IGHV3-33*03	89.0	Hu_IGHV3-33*03	50.0	H3	15	H3-15-*	-1	AQSAITSvTDSAMDH
B	heavy	Homo.sapiens	Hu_IGHV3-33*03	89.0	Hu_IGHV3-33*03	62.5	H4	8	H4-8-1	8	ADTSKNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022