PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6VPY

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV4-59*03	87.7	Hu_IGHV4-59*03	76.9	H1	13	H1-13-*	-1	TVSGGSMGGYYWS	BBBEBBABLBBBB
A	heavy	Homo.sapiens	Hu_IGHV4-59*03	87.7	Hu_IGHV4-59*03	55.6	H2	9	H2-9-1	8	YIFHTGHTN	BBBAALBBB
A	heavy	Homo.sapiens	Hu_IGHV4-59*03	87.7	Hu_IGHV4-59*03	100.0	H3	15	H3-15-*	-1	ASLPRGQlVNAFFDN
A	heavy	Homo.sapiens	Hu_IGHV4-59*03	87.7	Hu_IGHV4-59*03	87.5	H4	8	H4-8-1	9	VDTSENQF	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	97.0	Hu_IGLV3-1*01	90.9	L1	11	L1-11-3	5	SGDKLGDKNAC	BBBLAAABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	97.0	Hu_IGLV3-1*01	100.0	L2	8	L2-8-1	9	YQDSKRPS	BLLABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	97.0	Hu_IGLV3-1*01	62.5	L3	10	L3-10-3	14	QAWDSFSTFV	BBBBAAAEBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	97.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	16	NSGNTA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-59*03	87.7	Hu_IGHV4-59*03	76.9	H1	13	H1-13-*	-1	TVSGGSMGGYYWS	BBBEBBABLBBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*03	87.7	Hu_IGHV4-59*03	55.6	H2	9	H2-9-1	9	YIFHTGHTN	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*03	87.7	Hu_IGHV4-59*03	100.0	H3	15	H3-15-*	-1	ASLPRGQlVNAFFDN
H	heavy	Homo.sapiens	Hu_IGHV4-59*03	87.7	Hu_IGHV4-59*03	87.5	H4	8	H4-8-1	10	VDTSENQF	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	97.0	Hu_IGLV3-1*01	90.9	L1	11	L1-11-3	5	SGDKLGDKNAC	BBBLAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	97.0	Hu_IGLV3-1*01	100.0	L2	8	L2-8-1	9	YQDSKRPS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	97.0	Hu_IGLV3-1*01	62.5	L3	10	L3-10-3	14	QAWDSFSTFV	BBBBAAAEBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	97.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	16	NSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022