PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6VL8

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	92.3	H1	13	H1-13-1	8	KASGYTFKNYGMN	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	80.0	H2	10	H2-10-1	14	WINTYTGQPI	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	100.0	H3	7	H3-7-*	-1	ARDWGPY	BBBEEAB
A	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	100.0	H4	8	H4-8-1	12	LETSASTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	94.1	L1	17	L1-17-1	7	KSSQSVlyssnqMNYLA	BBABBABBAAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	100.0	L2	8	L2-8-1	9	YWASTRES	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	83.3	L3	8	L3-8-1	9	LQYLSSWT	BBAABEBB
B	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
C	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	92.3	H1	13	H1-13-1	9	KASGYTFKNYGMN	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	80.0	H2	10	H2-10-1	15	WINTYTGQPI	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	100.0	H3	7	H3-7-*	-1	ARDWGPY	BBBEEAB
C	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	100.0	H4	8	H4-8-1	8	LETSASTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	94.1	L1	17	L1-17-1	6	KSSQSVlyssnqMNYLA	BBABBABBAAALBBBBB
D	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	83.3	L3	8	L3-8-1	7	LQYLSSWT	BBAABEBB
D	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
E	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	92.3	H1	13	H1-13-1	9	KASGYTFKNYGMN	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	80.0	H2	10	H2-10-1	14	WINTYTGQPI	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	100.0	H3	7	H3-7-*	-1	ARDWGPY	BBBEEAB
E	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	100.0	H4	8	H4-8-1	9	LETSASTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	94.1	L1	17	L1-17-1	6	KSSQSVlyssnqMNYLA	BBABBABBAAALBBBBB
F	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	100.0	L2	8	L2-8-1	6	YWASTRES	BLLABBBB
F	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	83.3	L3	8	L3-8-1	9	LQYLSSWT	BBAABEBB
F	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	92.3	H1	13	H1-13-1	9	KASGYTFKNYGMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	80.0	H2	10	H2-10-1	14	WINTYTGQPI	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	100.0	H3	7	H3-7-*	-1	ARDWGPY	BBBEEAB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	98.6	Mo_IGHV9-3-1*01	100.0	H4	8	H4-8-1	8	LETSASTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	94.1	L1	17	L1-17-1	6	KSSQSVlyssnqMNYLA	BBABBABBAAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	100.0	L2	8	L2-8-1	9	YWASTRES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	83.3	L3	8	L3-8-1	8	LQYLSSWT	BBAABEBB
L	kappa	Mus.musculus	Mo_IGKV8-27*01	95.6	Mo_IGKV8-27*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022