PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6VEP

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	84.6	H1	13	H1-13-1	11	TVSGFPLTAYGVN	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	88.9	H2	9	H2-9-1	10	MIWGDGNTD	BBBAALBBB
C	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	100.0	H3	12	H3-12-*	-1	ARDPYGSKPMDY	BBBBBLABBBAB
C	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	100.0	H4	8	H4-8-1	9	KDNSKSQV	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	94.1	L1	17	L1-17-1	9	KSSQSLlyssnqKNFLA	BBABBABBAAALBBBBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	9	YWASTRES	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	57.1	L3	8	L3-8-1	8	QQYFRYRT	BBAABEBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
I	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	84.6	H1	13	H1-13-1	11	TVSGFPLTAYGVN	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	88.9	H2	9	H2-9-1	10	MIWGDGNTD	BBBAALBBB
I	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	100.0	H3	12	H3-12-*	-1	ARDPYGSKPMDY	BBBBBLABBBAB
I	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	100.0	H4	8	H4-8-1	9	KDNSKSQV	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	94.1	L1	17	L1-17-1	9	KSSQSLlyssnqKNFLA	BBABBABBAAALBBBBB
J	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLLABBBB
J	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	57.1	L3	8	L3-8-1	9	QQYFRYRT	BBAABEBB
J	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
O	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	84.6	H1	13	H1-13-1	11	TVSGFPLTAYGVN	BBBLBBAAABBBB
O	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	88.9	H2	9	H2-9-1	10	MIWGDGNTD	BBBAALBBB
O	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	100.0	H3	12	H3-12-*	-1	ARDPYGSKPMDY	BBBBBLABBBAB
O	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	100.0	H4	8	H4-8-1	9	KDNSKSQV	BBAAALBB
P	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	94.1	L1	17	L1-17-1	8	KSSQSLlyssnqKNFLA	BBABBABBAAALBBBBB
P	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLLABBBB
P	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	57.1	L3	8	L3-8-1	10	QQYFRYRT	BBAABEBB
P	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
U	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	84.6	H1	13	H1-13-1	11	TVSGFPLTAYGVN	BBBLBBAAABBBB
U	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	88.9	H2	9	H2-9-1	11	MIWGDGNTD	BBBAALBBB
U	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	100.0	H3	12	H3-12-*	-1	ARDPYGSKPMDY	BBBBBLABBBAB
U	heavy	Mus.musculus	Mo_IGHV2-6-7*01	100.0	Mo_IGHV2-6-7*01	100.0	H4	8	H4-8-1	9	KDNSKSQV	BBAAALBB
V	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	94.1	L1	17	L1-17-1	8	KSSQSLlyssnqKNFLA	BBABBABBAAALBBBBB
V	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	6	YWASTRES	BLLABBBB
V	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	57.1	L3	8	L3-8-1	6	QQYFRYRT	BBAABEBB
V	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	3	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022