PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6V4O

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	61.5	H1	13	H1-13-1	10	KASGYTFINHALS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	80.0	H2	10	H2-10-*	-1	GIIPIFGLAK	BBBAAALALB
A	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	100.0	H3	23	H3-23-*	-1	ARDTVAVYEDfdwsspyffYMDV
A	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	87.5	H4	8	H4-8-1	12	ADESTKTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	66.7	L1	12	L1-12-*	-1	RASQSAgSKSLA	BBABBBLBABBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	87.5	L2	8	L2-8-1	16	NGASSRAT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	100.0	L3	9	L3-9-2	29	QRYGTSLVT	BBAABABBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	83.3	L4	6	L4-6-1	30	GSGPDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	61.5	H1	13	H1-13-1	10	KASGYTFINHALS	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	80.0	H2	10	H2-10-*	-1	GIIPIFGLAK	BBBAAALALB
C	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	100.0	H3	23	H3-23-*	-1	ARDTVAVYEDfdwsspyffYMDV
C	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	87.5	H4	8	H4-8-1	12	ADESTKTA	BBAAALBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	61.5	H1	13	H1-13-1	10	KASGYTFINHALS	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	80.0	H2	10	H2-10-*	-1	GIIPIFGLAK	BBBAAALALB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	100.0	H3	23	H3-23-*	-1	ARDTVAVYEDfdwsspyffYMDV
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	87.5	H4	8	H4-8-1	12	ADESTKTA	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	66.7	L1	12	L1-12-*	-1	RASQSAgSKSLA	BBABBBLBABBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	87.5	L2	8	L2-8-1	16	NGASSRAT	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	100.0	L3	9	L3-9-2	29	QRYGTSLVT	BBAABABBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	83.3	L4	6	L4-6-1	30	GSGPDF	EBEABB
G	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	66.7	L1	12	L1-12-*	-1	RASQSAgSKSLA	BBABBBLBABBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	87.5	L2	8	L2-8-1	16	NGASSRAT	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	100.0	L3	9	L3-9-2	29	QRYGTSLVT	BBAABABBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	83.3	L4	6	L4-6-1	30	GSGPDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	61.5	H1	13	H1-13-1	10	KASGYTFINHALS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	80.0	H2	10	H2-10-*	-1	GIIPIFGLAK	BBBAAALALB
H	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	100.0	H3	23	H3-23-*	-1	ARDTVAVYEDfdwsspyffYMDV
H	heavy	Homo.sapiens	Hu_IGHV1-69*01	89.0	Hu_IGHV1-69*01	87.5	H4	8	H4-8-1	12	ADESTKTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	66.7	L1	12	L1-12-*	-1	RASQSAgSKSLA	BBABBBLBABBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	87.5	L2	8	L2-8-1	16	NGASSRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	100.0	L3	9	L3-9-2	29	QRYGTSLVT	BBAABABBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*02	89.9	Hu_IGKV3-20*02	83.3	L4	6	L4-6-1	30	GSGPDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022