PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6UDJ

#CDRs = 8; #Clusters = 17.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV4-59*03	89.0	Hu_IGHV4-59*03	53.8	H1	13	H1-13-*	-1	SVSGDSMNNYYWT	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV4-59*03	89.0	Hu_IGHV4-59*03	33.3	H2	9	H2-9-1	31	YISDRESAT	BBBAALBBB
A	heavy	Homo.sapiens	Hu_IGHV4-59*03	89.0	Hu_IGHV4-59*03	100.0	H3	26	H3-26-*	-1	ATARRGQriygvvsfgeffYYYSMDV
A	heavy	Homo.sapiens	Hu_IGHV4-59*03	89.0	Hu_IGHV4-59*03	75.0	H4	8	H4-8-1	16	RDTSKNQL	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV3-21*01	74.2	Hu_IGLV3-21*01	36.4	L1	11	L1-11-*	-1	GRQALGSRAVQ	ABBBBEBBBBB
B	lambda	Homo.sapiens	Hu_IGLV3-21*01	74.2	Hu_IGLV3-21*01	62.5	L2	8	L2-8-1	10	YNNQDRPS	BLLABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-21*01	74.2	Hu_IGLV3-21*01	44.4	L3	12	L3-12-*	-1	HMWDSRSgFSWS
B	lambda	Homo.sapiens	Hu_IGLV3-21*01	74.2	Hu_IGLV3-21*01	0.0	L4	9	L4-9-*	-1	PDinfGTRA
D	heavy	Homo.sapiens	Hu_IGHV1-46*01	59.2	CDRLenMismatch	-1.0	H1	19	H1-19-*	-1	RADddpytdDDTFTKYWTH
D	heavy	Homo.sapiens	Hu_IGHV1-46*01	59.2	Hu_IGHV1-46*01	20.0	H2	10	H2-10-1	22	VISPHFARPI	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-46*01	59.2	Hu_IGHV1-46*01	100.0	H3	18	H3-18-*	-1	ARDpfgdRAPHYNYHMDV
D	heavy	Homo.sapiens	Hu_IGHV1-46*01	59.2	Hu_IGHV1-46*01	50.0	H4	8	H4-8-*	-1	RDSSLTAV	BBAALABB
E	kappa	Homo.sapiens	Hu_IGKV3-20*02	75.4	Hu_IGKV3-20*02	66.7	L1	12	L1-12-*	-1	RASQGLDsSHLA	BBABLBALAABB
E	kappa	Homo.sapiens	Hu_IGKV3-20*02	75.4	Hu_IGKV3-20*02	50.0	L2	8	L2-8-*	-1	FGTSNRAR	BLLABBBA
E	kappa	Homo.sapiens	Hu_IGKV3-20*02	75.4	Hu_IGKV3-20*02	100.0	L3	9	L3-9-cis7-*	-1	QRYGGTPIT	BBBLEBbBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*02	75.4	Hu_IGKV3-20*02	83.3	L4	6	L4-6-1	10	GSGADF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	59.2	CDRLenMismatch	-1.0	H1	19	H1-19-*	-1	RADddpytdDDTFTKYWTH
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	59.2	Hu_IGHV1-46*01	20.0	H2	10	H2-10-1	23	VISPHFARPI	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	59.2	Hu_IGHV1-46*01	100.0	H3	18	H3-18-*	-1	ARDpfgdRAPHYNYHMDV
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	59.2	Hu_IGHV1-46*01	50.0	H4	8	H4-8-*	-1	RDSSLTAV	BBAALABB
I	kappa	Homo.sapiens	Hu_IGKV3-20*02	75.4	Hu_IGKV3-20*02	66.7	L1	12	L1-12-*	-1	RASQGLDsSHLA	BBABLBALAABB
I	kappa	Homo.sapiens	Hu_IGKV3-20*02	75.4	Hu_IGKV3-20*02	50.0	L2	8	L2-8-*	-1	FGTSNRAR	BLLABBBA
I	kappa	Homo.sapiens	Hu_IGKV3-20*02	75.4	Hu_IGKV3-20*02	100.0	L3	9	L3-9-cis7-*	-1	QRYGGTPIT	BBBLEBbBB
I	kappa	Homo.sapiens	Hu_IGKV3-20*02	75.4	Hu_IGKV3-20*02	83.3	L4	6	L4-6-1	11	GSGADF	EBEABB
K	heavy	Homo.sapiens	Hu_IGHV4-59*03	89.0	Hu_IGHV4-59*03	53.8	H1	13	H1-13-*	-1	SVSGDSMNNYYWT	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV4-59*03	89.0	Hu_IGHV4-59*03	33.3	H2	9	H2-9-1	29	YISDRESAT	BBBAALBBB
K	heavy	Homo.sapiens	Hu_IGHV4-59*03	89.0	Hu_IGHV4-59*03	100.0	H3	26	H3-26-*	-1	ATARRGQriygvvsfgeffYYYSMDV
K	heavy	Homo.sapiens	Hu_IGHV4-59*03	89.0	Hu_IGHV4-59*03	75.0	H4	8	H4-8-1	20	RDTSKNQL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV3-21*01	74.2	Hu_IGLV3-21*01	36.4	L1	11	L1-11-*	-1	GRQALGSRAVQ	ABBBBEBBBBB
L	lambda	Homo.sapiens	Hu_IGLV3-21*01	74.2	Hu_IGLV3-21*01	62.5	L2	8	L2-8-1	8	YNNQDRPS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-21*01	74.2	Hu_IGLV3-21*01	44.4	L3	12	L3-12-*	-1	HMWDSRSgFSWS
L	lambda	Homo.sapiens	Hu_IGLV3-21*01	74.2	Hu_IGLV3-21*01	0.0	L4	9	L4-9-*	-1	PDinfGTRA
N	heavy	Homo.sapiens	Hu_IGHV1-46*01	59.2	CDRLenMismatch	-1.0	H1	19	H1-19-*	-1	RADddpytdDDTFTKYWTH
N	heavy	Homo.sapiens	Hu_IGHV1-46*01	59.2	Hu_IGHV1-46*01	20.0	H2	10	H2-10-1	23	VISPHFARPI	BBBAAALBBB
N	heavy	Homo.sapiens	Hu_IGHV1-46*01	59.2	Hu_IGHV1-46*01	100.0	H3	18	H3-18-*	-1	ARDpfgdRAPHYNYHMDV
N	heavy	Homo.sapiens	Hu_IGHV1-46*01	59.2	Hu_IGHV1-46*01	50.0	H4	8	H4-8-*	-1	RDSSLTAV	BBAALABB
O	kappa	Homo.sapiens	Hu_IGKV3-20*02	75.4	Hu_IGKV3-20*02	66.7	L1	12	L1-12-*	-1	RASQGLDsSHLA	BBABLBALAABB
O	kappa	Homo.sapiens	Hu_IGKV3-20*02	75.4	Hu_IGKV3-20*02	50.0	L2	8	L2-8-*	-1	FGTSNRAR	BLLABBBA
O	kappa	Homo.sapiens	Hu_IGKV3-20*02	75.4	Hu_IGKV3-20*02	100.0	L3	9	L3-9-cis7-*	-1	QRYGGTPIT	BBBLEBbBB
O	kappa	Homo.sapiens	Hu_IGKV3-20*02	75.4	Hu_IGKV3-20*02	83.3	L4	6	L4-6-1	10	GSGADF	EBEABB
Q	heavy	Homo.sapiens	Hu_IGHV4-59*03	89.0	Hu_IGHV4-59*03	53.8	H1	13	H1-13-*	-1	SVSGDSMNNYYWT	BBBLBBAAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-59*03	89.0	Hu_IGHV4-59*03	33.3	H2	9	H2-9-*	-1	YISDRESAT	BBBAALBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-59*03	89.0	Hu_IGHV4-59*03	100.0	H3	26	H3-26-*	-1	ATARRGQriygvvsfgeffYYYSMDV
Q	heavy	Homo.sapiens	Hu_IGHV4-59*03	89.0	Hu_IGHV4-59*03	75.0	H4	8	H4-8-1	17	RDTSKNQL	BBAAALBB
R	lambda	Homo.sapiens	Hu_IGLV3-21*01	74.2	Hu_IGLV3-21*01	36.4	L1	11	L1-11-*	-1	GRQALGSRAVQ	ABBBBEBBBBB
R	lambda	Homo.sapiens	Hu_IGLV3-21*01	74.2	Hu_IGLV3-21*01	62.5	L2	8	L2-8-1	8	YNNQDRPS	BLLABBBB
R	lambda	Homo.sapiens	Hu_IGLV3-21*01	74.2	Hu_IGLV3-21*01	44.4	L3	12	L3-12-*	-1	HMWDSRSgFSWS
R	lambda	Homo.sapiens	Hu_IGLV3-21*01	74.2	Hu_IGLV3-21*01	0.0	L4	9	L4-9-*	-1	PDinfGTRA

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