PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6U9S

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Hu_IGHV7-4-1*02	95.9	Mo_IGHV9-2-1*01	84.6	H1	13	H1-13-1	12	KASGYTFTDDSIH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Hu_IGHV7-4-1*02	95.9	Mo_IGHV9-2-1*01	100.0	H2	10	H2-10-1	14	WINTETGEPT	BBBAAALBBB
A	heavy	Mus.musculus	Hu_IGHV7-4-1*02	95.9	Hu_IGHV7-4-1*02	100.0	H3	12	H3-12-*	-1	ARLSPVVVIFIY	BBBBBEALBBAB
A	heavy	Mus.musculus	Hu_IGHV7-4-1*02	95.9	Hu_IGHV7-4-1*02	100.0	H4	8	H4-8-1	11	LDTSVSTA	BBAAALBB
B	kappa	Mus.musculus	Hu_IGKV2-28*01	100.0	Mo_IGKV8-21*01	94.1	L1	17	L1-17-1	9	KSSQSLlhsrtrKNYLA	BBABBABBAAALBBBBB
B	kappa	Mus.musculus	Hu_IGKV2-28*01	100.0	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	4	YWASTRES	BLLABBBB
B	kappa	Mus.musculus	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	14.3	L3	8	L3-8-1	5	KQSYNLYA	BBAABEBB
B	kappa	Mus.musculus	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
D	heavy	Mus.musculus	Hu_IGHV7-4-1*02	95.9	Mo_IGHV9-2-1*01	84.6	H1	13	H1-13-1	12	KASGYTFTDDSIH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Hu_IGHV7-4-1*02	95.9	Mo_IGHV9-2-1*01	100.0	H2	10	H2-10-1	14	WINTETGEPT	BBBAAALBBB
D	heavy	Mus.musculus	Hu_IGHV7-4-1*02	95.9	Hu_IGHV7-4-1*02	100.0	H3	12	H3-12-*	-1	ARLSPVVVIFIY	BBBBBEALBBAB
D	heavy	Mus.musculus	Hu_IGHV7-4-1*02	95.9	Hu_IGHV7-4-1*02	100.0	H4	8	H4-8-1	11	LDTSVSTA	BBAAALBB
E	kappa	Mus.musculus	Hu_IGKV2-28*01	100.0	Mo_IGKV8-21*01	94.1	L1	17	L1-17-1	9	KSSQSLlhsrtrKNYLA	BBABBABBAAALBBBBB
E	kappa	Mus.musculus	Hu_IGKV2-28*01	100.0	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	4	YWASTRES	BLLABBBB
E	kappa	Mus.musculus	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	14.3	L3	8	L3-8-1	6	KQSYNLYA	BBAABEBB
E	kappa	Mus.musculus	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022